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The map label for this gene is ydcM [C]

Identifier: 86604950

GI number: 86604950

Start: 229317

End: 230522

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0226

Alternate gene names: 86604950

Gene position: 230522-229317 (Counterclockwise)

Preceding gene: 86604952

Following gene: 86604949

Centisome position: 7.86

GC content: 54.81

Gene sequence:

>1206_bases
ATGTTGCTAGGTTTTTGCACCCGATTGGAACTAAATAACCGGCAAAAGACCTTGGCCGCTCAGCATGCAGGGGTAGCTCG
TCACGCCTACAACTGGGGTCTGGCTATCTGCAAGCAGGCTGTTGAATCCAAACAGAAGCTACCCACGGCTATTGACCTGC
ACAAGCGCTTGGTAGCCGAGGTGAAGAAAGAAAATCCCTGGTACTACCAGGTCTCCAAATGCGCTCCTCAGCAGGCCCTC
CGCAACTTGGAGCAAGCCTTTAAGCGCTGGCGGAGTGGGTTGGGGAAGTTCCCCCGCTTCAAACGCAAGGGAGTGCGAGA
CAGCTTTTACTTGGAAGGTAGCATCCGCATCTCTGGTGACCGCATCAAGGTACCTATCCTTGGTTGGTTACGCTGTGCGG
AGCTGCTCCCCACTGCCACACCCAAGAACGTGGTCATTAGTCTTCGCGCTGGACATTGGTATGTCTCCTTCAAGTATGAA
GCTCCGGCGCCTCAGGTGGAGAAGACCGGGGAAGTTGTGGGAGTAGACTTAGGTATCAATCGCTTGGCCACCTGTTCCGA
CGGGGAAGTATTCGAGAATCCAAAGCCCTATTACAAAGCGAAGAAGCGTCTGGCCAGGCTGCAACGGCGACTGAGTCGTA
AGCAGAAGGGATCCGCTAACCGTAAGAAGGCAGTAGCCCAGCTCGCTAAGGCCCATAAGCGGGTGGCAGACATTCGGCAA
GACAATCTGCACAAGCTAACGACCTACCTGGCCAAGAAATATCGGGTAGTGGTGATTGAGGACTTGCAGGTGAAGAACCT
GCTTAAGAACCACAAGCTGGCAGGAGCGCTGTCAGATTGTGGCTTTTACGAGTTTCGGCGACAGCTAGAGTATAAGGCCC
GGCTCTACGGCTGTCAGGTGGTGGTGGCGGATAGGTTTTATCCGTCCAGCCAACTGTGTTCTCGCTGTGGGCACCGACAG
AAGATGCCGCTACAGGAAAGGATGTTCTGCTGCCCGTGTTGTGGTCTGGAGCTAGACCGCGACTTGAATGCAGCCCTAAA
CCTGTTGCGGTGGTACAGAACTACCTCAAGCTCTGGGGGAAGTGACGCCTGTGGAGATCCCTCTGGCGGGGTGGTAGGGG
TGAACTCTGCCGCTAGTCATGGGTCGCTGAAGCAGGAAGAAAGCAGCGATGCTGGGCAAAGTTCTGCTTTGTTCAGCGTT
GCATAA

Upstream 100 bases:

>100_bases
GGGAAAGCCTCTAGTCCTGAATTTGCTGAACAACATATTGTCTTACGGAACTAAAATAGCCATACTGAATTAAGCGTGCT
GCCGCGGCTATCCCAAAGTT

Downstream 100 bases:

>100_bases
GTCTTTCGGAGCGGAAAGCTAGAGTCTTGCCCCAATGGCCATTGCCGCATTTCTTTACGCTGCCGCTTTGGTTCTTTTGC
TGATCGCAGGAGTCGTTTGG

Product: ISSoc7, transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MLLGFCTRLELNNRQKTLAAQHAGVARHAYNWGLAICKQAVESKQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRSGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPILGWLRCAELLPTATPKNVVISLRAGHWYVSFKYE
APAPQVEKTGEVVGVDLGINRLATCSDGEVFENPKPYYKAKKRLARLQRRLSRKQKGSANRKKAVAQLAKAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEDLQVKNLLKNHKLAGALSDCGFYEFRRQLEYKARLYGCQVVVADRFYPSSQLCSRCGHRQ
KMPLQERMFCCPCCGLELDRDLNAALNLLRWYRTTSSSGGSDACGDPSGGVVGVNSAASHGSLKQEESSDAGQSSALFSV
A

Sequences:

>Translated_401_residues
MLLGFCTRLELNNRQKTLAAQHAGVARHAYNWGLAICKQAVESKQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRSGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPILGWLRCAELLPTATPKNVVISLRAGHWYVSFKYE
APAPQVEKTGEVVGVDLGINRLATCSDGEVFENPKPYYKAKKRLARLQRRLSRKQKGSANRKKAVAQLAKAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEDLQVKNLLKNHKLAGALSDCGFYEFRRQLEYKARLYGCQVVVADRFYPSSQLCSRCGHRQ
KMPLQERMFCCPCCGLELDRDLNAALNLLRWYRTTSSSGGSDACGDPSGGVVGVNSAASHGSLKQEESSDAGQSSALFSV
A
>Mature_401_residues
MLLGFCTRLELNNRQKTLAAQHAGVARHAYNWGLAICKQAVESKQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRSGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPILGWLRCAELLPTATPKNVVISLRAGHWYVSFKYE
APAPQVEKTGEVVGVDLGINRLATCSDGEVFENPKPYYKAKKRLARLQRRLSRKQKGSANRKKAVAQLAKAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEDLQVKNLLKNHKLAGALSDCGFYEFRRQLEYKARLYGCQVVVADRFYPSSQLCSRCGHRQ
KMPLQERMFCCPCCGLELDRDLNAALNLLRWYRTTSSSGGSDACGDPSGGVVGVNSAASHGSLKQEESSDAGQSSALFSV
A

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=350, Percent_Identity=36.2857142857143, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45063; Mature: 45063

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLGFCTRLELNNRQKTLAAQHAGVARHAYNWGLAICKQAVESKQKLPTAIDLHKRLVAE
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VKKENPWYYQVSKCAPQQALRNLEQAFKRWRSGLGKFPRFKRKGVRDSFYLEGSIRISGD
HHHCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCC
RIKVPILGWLRCAELLPTATPKNVVISLRAGHWYVSFKYEAPAPQVEKTGEVVGVDLGIN
EEEEHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEECCC
RLATCSDGEVFENPKPYYKAKKRLARLQRRLSRKQKGSANRKKAVAQLAKAHKRVADIRQ
CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DNLHKLTTYLAKKYRVVVIEDLQVKNLLKNHKLAGALSDCGFYEFRRQLEYKARLYGCQV
HHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEE
VVADRFYPSSQLCSRCGHRQKMPLQERMFCCPCCGLELDRDLNAALNLLRWYRTTSSSGG
EEECCCCCHHHHHHHCCCCCCCCHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
SDACGDPSGGVVGVNSAASHGSLKQEESSDAGQSSALFSVA
CCCCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCCEEECC
>Mature Secondary Structure
MLLGFCTRLELNNRQKTLAAQHAGVARHAYNWGLAICKQAVESKQKLPTAIDLHKRLVAE
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VKKENPWYYQVSKCAPQQALRNLEQAFKRWRSGLGKFPRFKRKGVRDSFYLEGSIRISGD
HHHCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCC
RIKVPILGWLRCAELLPTATPKNVVISLRAGHWYVSFKYEAPAPQVEKTGEVVGVDLGIN
EEEEHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEECCC
RLATCSDGEVFENPKPYYKAKKRLARLQRRLSRKQKGSANRKKAVAQLAKAHKRVADIRQ
CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DNLHKLTTYLAKKYRVVVIEDLQVKNLLKNHKLAGALSDCGFYEFRRQLEYKARLYGCQV
HHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEE
VVADRFYPSSQLCSRCGHRQKMPLQERMFCCPCCGLELDRDLNAALNLLRWYRTTSSSGG
EEECCCCCHHHHHHHCCCCCCCCHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
SDACGDPSGGVVGVNSAASHGSLKQEESSDAGQSSALFSVA
CCCCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]