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The map label for this gene is cpcD

Identifier: 86604942

GI number: 86604942

Start: 224564

End: 224824

Strand: Reverse

Name: cpcD

Synonym: CYA_0218

Alternate gene names: 86604942

Gene position: 224824-224564 (Counterclockwise)

Preceding gene: 86604943

Following gene: 86604941

Centisome position: 7.67

GC content: 59.77

Gene sequence:

>261_bases
ATGTTTGGTCAAAGCACCAGCGGCCCTGAAACTTTGACGGAAGCCGGCAGCCGGGTTTACAAGGTTGAGTACACTGGCCT
GCTCAACCCACCCGATGCTCTGGCCACCTCGGCTAAGGTGCGTCGCAGTACCATGAGCATCACAGTTCCTTACAGCCGGC
TGTCCACGGAGATGCAGCGCATTCTGCGGATGGGCGGCAAAATCGTGCAGGTCACTGCTCTATCGGCGGCCCCTGCCCAG
AGCAACGGCGCTGCTGAGTAA

Upstream 100 bases:

>100_bases
CAGTTCTGCCTCTAGAGGTGGCTTTTGCGGCCTCTCTGGCGGTCAAGAGGTCTTCGTGCCCAGGTGCCGCACAAAGTTGA
ACTCGACTCGGGGGAAAACG

Downstream 100 bases:

>100_bases
GGGATCCCTCTGCTCAACGGCAGTCATCGGCAAGGTGGCCTCGATTCCATGGACGGCTCTGCAAGGGTTCCCATGACATC
CAACACAGCGGTGCTGCCCC

Product: phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod

Products: NA

Alternate protein names: Rod-capping linker protein [H]

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MFGQSTSGPETLTEAGSRVYKVEYTGLLNPPDALATSAKVRRSTMSITVPYSRLSTEMQRILRMGGKIVQVTALSAAPAQ
SNGAAE

Sequences:

>Translated_86_residues
MFGQSTSGPETLTEAGSRVYKVEYTGLLNPPDALATSAKVRRSTMSITVPYSRLSTEMQRILRMGGKIVQVTALSAAPAQ
SNGAAE
>Mature_86_residues
MFGQSTSGPETLTEAGSRVYKVEYTGLLNPPDALATSAKVRRSTMSITVPYSRLSTEMQRILRMGGKIVQVTALSAAPAQ
SNGAAE

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: COG0369

COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 9106; Mature: 9106

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQSTSGPETLTEAGSRVYKVEYTGLLNPPDALATSAKVRRSTMSITVPYSRLSTEMQR
CCCCCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEECHHHHHHHHHH
ILRMGGKIVQVTALSAAPAQSNGAAE
HHHCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MFGQSTSGPETLTEAGSRVYKVEYTGLLNPPDALATSAKVRRSTMSITVPYSRLSTEMQR
CCCCCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEECHHHHHHHHHH
ILRMGGKIVQVTALSAAPAQSNGAAE
HHHCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3933528 [H]