Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86604922

Identifier: 86604922

GI number: 86604922

Start: 197547

End: 198674

Strand: Reverse

Name: 86604922

Synonym: CYA_0198

Alternate gene names: NA

Gene position: 198674-197547 (Counterclockwise)

Preceding gene: 86604923

Following gene: 86604921

Centisome position: 6.77

GC content: 60.11

Gene sequence:

>1128_bases
ATGGTTTTCAAGAGTTTTCGCCGCCGAGCCAGCAGAGGGTTTACCCTCATTGAGTTGTTGGTCTCGCTGCTGATTGCCTC
CATCTTTCTCCTGGCCACAGGGATGATCGTCGTCGAGACGATGCGGCTGGATCGGGAGGAGACAGGGCGCACCCAGGTGC
AGGCGGAGCTGACCCAAGCCATGGAATATATCCAGCAGGATCTGGCGGAGGCTCTCTACATTTACAACGACACCGAACAA
CCCAATGGAGACGGGATCCCGGATGTTATCCAGCGGCTTTACACCCCCGGCTGGATCCGCCAACCCGCGGGCGCTATCCC
GGTTGTCGCCTTTTGGAAGCTGGAGCCGATCCCGCAGGGATGCTACGCGGGCAACCCCACCTTGCAACAGATTCGCGAAG
GCCGTGCTAGATTGCCCAACCAACCACCTGATGGGTTCCCGCGCGACCAGAACGGCAGAAATGCGGATTGGGAAACGCTG
CTCAGCCGCCGCGGCATCTACACCTTGGTGGTGTATTACCTGCGCCGCAACTACAACAACGCCGGCAACTTGGCGGATGG
TTCGACAACCCCTTGGGAAGGCAACGCGCGGATCGAGCGTTTTGAGCTGAGACCTTTTGCAAGGCAGGGGAACAACGACT
GCGCCGGGCGCAGCCCGTTCTTTGTCGAAGATCCCGATCCTTTCCGAGATGGTTTTCTCGCTTGGCCTTCCGAGCAGGCC
CGAGCACGCCAGATCCCGATTGCCGGCAGGACAGATGGCCCCCGCCTGACAACTCTAGTCTCCAACATCTTCAGCAGCCG
AGAGGGAAGTCCGCAGGTTGCGCCCGCTTGCCCGCAGGGCTATGCCTTTGGTGGCGGCAGGCCCAACGGCGTCACCTTCC
CAGAGCTGGAAGATAACCAAAACGACGTGGGCTTCTATGTCTGCGTGCGGCAAAGCGTCGGCGCTGACCGACCGCAGGAT
GTGATCATCAACATCACCGCCACGGCCATGGAGCGGGCCAACCCTGGCCTTTTCCGTCGCTACATCCGAAATGCCACCAG
CGTCGATATCTCAGAGGTGTCGCGCTACTTGCTGCCAATGCAAACACTGGTTCTTGCCCGCGGCGTTATCAACCGTCAGC
TCTCCTAG

Upstream 100 bases:

>100_bases
GGTGCCGGGCTTTCCCCCTGCCTGTTAATCCTGTTGCACCGTGAGGTAGAGCCTAAGTTCCTTCCCGCAAAACCTGTTGA
GAAGATGGGGGTGTTTCCCT

Downstream 100 bases:

>100_bases
GGGGAATGTCCAGTATGTTGGCCTTGGAGAAAAAAACAATTGGCCGAGCTCAGCCGCTTCGATCCCTGGGCTTTACGCTG
GTAGAAGTCCTGGCGGTGGT

Product: PddD domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ
PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL
LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA
RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD
VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS

Sequences:

>Translated_375_residues
MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ
PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL
LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA
RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD
VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS
>Mature_375_residues
MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ
PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL
LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA
RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD
VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42047; Mature: 42047

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH
MEYIQQDLAEALYIYNDTEQPNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQG
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC
CYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETLLSRRGIYTLVVYYLRRNYNN
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
AGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA
CCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEECCCCCHHHCCCCCCCCHHH
RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQ
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NDVGFYVCVRQSVGADRPQDVIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPM
CCCEEEEEEEHHCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
QTLVLARGVINRQLS
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH
MEYIQQDLAEALYIYNDTEQPNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQG
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC
CYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETLLSRRGIYTLVVYYLRRNYNN
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
AGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA
CCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEECCCCCHHHCCCCCCCCHHH
RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQ
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NDVGFYVCVRQSVGADRPQDVIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPM
CCCEEEEEEEHHCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
QTLVLARGVINRQLS
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA