| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86604796
Identifier: 86604796
GI number: 86604796
Start: 61714
End: 62496
Strand: Reverse
Name: 86604796
Synonym: CYA_0064
Alternate gene names: NA
Gene position: 62496-61714 (Counterclockwise)
Preceding gene: 86604797
Following gene: 86604795
Centisome position: 2.13
GC content: 58.75
Gene sequence:
>783_bases GTGCTGCGCTATTTGCAGGTGTTGTGGTTGTTTTGGAGCACTTCTGTAGCTGCAGAAATGGAGTACCGGGCCAATTTTGT CTTTGCCAGCCTCAGCAGCTTGGGCGGCCTGGGGTCAGCTTTGTTTGGGCTGTCGCTGTTCTACCAGCAGGGGCACCGCC TGGGGGGCTGGAGCTGGCCGGAGGCGCTCATCGTCTTGGGGGTGTTCACCATTTTGCAGGGGGTGTCGGCCAGCCTTTTT AACGTCAACTTAAACCGCATCGTGCAACAAGTTCAGGAAGGCACCCTGGATTTTGTGTTGCTCAAGCCCATCAGCAGTCA GTTTTGGCTGTCAACGCGGGTGTTTTCTCCCTGGGGCCTGGTGGATATTGGCTGTGGCCTGTTGTTGATTCTCTACGCCG GGATCCAGTTGCGGCTGCCGGCCTGGGCCTATGTTCTGGGTCTAGTGCCCCTTTTGCTGGGGTTGGTCATCCTCTACAGC CTCTGGTTTATGCTGGGGGCCACCAGCATCTGGTTTGTCAAGATCTACAACGTCACCGAGGTGTTGCGGGGCTTGGTGGA GGCGGGGCGATTCCCGCTGGTGGCCTATCCGGTGGCCTATCGGTTGTTTTTTACCTTCGTCGTGCCGGTGGCTTTCTTGA CCACCGTGCCGGCAGAAGCCTTGCTGGGTCGGATCCAGTGGCCCTGGCTTGTGGGATCCGCCCTGCTGGCGGCGGGGCTG CTGTGGGGATCCCATTTGTTCTGGCGCTTTGCCCTGCGCTTTTACACCAGCGCCTCTAGTTAA
Upstream 100 bases:
>100_bases AGGTGTTACAAAGCCATTTCTTAGAAGTGTTTCACCCCTATTTGATTACTGCCCGCTGCTACCGCAAGTGGAATGAACGC TGAGATGGGAGAAAACCCAA
Downstream 100 bases:
>100_bases AATCTCCGTCCAAACCTTTCCATCCTGAGCATCCAAGCAGGGAGGATGGGAGTAATTGCTACAGAAGCGCCCCACGCGCT CCCCTTTGGGAAGAACAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL LWGSHLFWRFALRFYTSASS
Sequences:
>Translated_260_residues MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL LWGSHLFWRFALRFYTSASS >Mature_260_residues MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL LWGSHLFWRFALRFYTSASS
Specific function: Unknown
COG id: COG3694
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29069; Mature: 29069
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHH EALIVLGVFTILQGVSASLFNVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGL HHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCH VDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYSLWFMLGATSIWFVKIYNVTE HHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH LWGSHLFWRFALRFYTSASS HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHH EALIVLGVFTILQGVSASLFNVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGL HHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCH VDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYSLWFMLGATSIWFVKIYNVTE HHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH LWGSHLFWRFALRFYTSASS HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA