Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86604796

Identifier: 86604796

GI number: 86604796

Start: 61714

End: 62496

Strand: Reverse

Name: 86604796

Synonym: CYA_0064

Alternate gene names: NA

Gene position: 62496-61714 (Counterclockwise)

Preceding gene: 86604797

Following gene: 86604795

Centisome position: 2.13

GC content: 58.75

Gene sequence:

>783_bases
GTGCTGCGCTATTTGCAGGTGTTGTGGTTGTTTTGGAGCACTTCTGTAGCTGCAGAAATGGAGTACCGGGCCAATTTTGT
CTTTGCCAGCCTCAGCAGCTTGGGCGGCCTGGGGTCAGCTTTGTTTGGGCTGTCGCTGTTCTACCAGCAGGGGCACCGCC
TGGGGGGCTGGAGCTGGCCGGAGGCGCTCATCGTCTTGGGGGTGTTCACCATTTTGCAGGGGGTGTCGGCCAGCCTTTTT
AACGTCAACTTAAACCGCATCGTGCAACAAGTTCAGGAAGGCACCCTGGATTTTGTGTTGCTCAAGCCCATCAGCAGTCA
GTTTTGGCTGTCAACGCGGGTGTTTTCTCCCTGGGGCCTGGTGGATATTGGCTGTGGCCTGTTGTTGATTCTCTACGCCG
GGATCCAGTTGCGGCTGCCGGCCTGGGCCTATGTTCTGGGTCTAGTGCCCCTTTTGCTGGGGTTGGTCATCCTCTACAGC
CTCTGGTTTATGCTGGGGGCCACCAGCATCTGGTTTGTCAAGATCTACAACGTCACCGAGGTGTTGCGGGGCTTGGTGGA
GGCGGGGCGATTCCCGCTGGTGGCCTATCCGGTGGCCTATCGGTTGTTTTTTACCTTCGTCGTGCCGGTGGCTTTCTTGA
CCACCGTGCCGGCAGAAGCCTTGCTGGGTCGGATCCAGTGGCCCTGGCTTGTGGGATCCGCCCTGCTGGCGGCGGGGCTG
CTGTGGGGATCCCATTTGTTCTGGCGCTTTGCCCTGCGCTTTTACACCAGCGCCTCTAGTTAA

Upstream 100 bases:

>100_bases
AGGTGTTACAAAGCCATTTCTTAGAAGTGTTTCACCCCTATTTGATTACTGCCCGCTGCTACCGCAAGTGGAATGAACGC
TGAGATGGGAGAAAACCCAA

Downstream 100 bases:

>100_bases
AATCTCCGTCCAAACCTTTCCATCCTGAGCATCCAAGCAGGGAGGATGGGAGTAATTGCTACAGAAGCGCCCCACGCGCT
CCCCTTTGGGAAGAACAATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF
NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS
LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL
LWGSHLFWRFALRFYTSASS

Sequences:

>Translated_260_residues
MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF
NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS
LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL
LWGSHLFWRFALRFYTSASS
>Mature_260_residues
MLRYLQVLWLFWSTSVAAEMEYRANFVFASLSSLGGLGSALFGLSLFYQQGHRLGGWSWPEALIVLGVFTILQGVSASLF
NVNLNRIVQQVQEGTLDFVLLKPISSQFWLSTRVFSPWGLVDIGCGLLLILYAGIQLRLPAWAYVLGLVPLLLGLVILYS
LWFMLGATSIWFVKIYNVTEVLRGLVEAGRFPLVAYPVAYRLFFTFVVPVAFLTTVPAEALLGRIQWPWLVGSALLAAGL
LWGSHLFWRFALRFYTSASS

Specific function: Unknown

COG id: COG3694

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29069; Mature: 29069

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA