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The map label for this gene is ccmI

Identifier: 86361227

GI number: 86361227

Start: 562291

End: 563160

Strand: Reverse

Name: ccmI

Synonym: RHE_PF00498

Alternate gene names: 86361227

Gene position: 563160-562291 (Counterclockwise)

Preceding gene: 86361228

Following gene: 86361226

Centisome position: 87.65

GC content: 62.99

Gene sequence:

>870_bases
ATGCTTATCTGGATTGTTTTCGCGGCCGTCGCGACTGCCGTCGTCGCTTCCCTTCTTCATCCGCTTGCTTCCAGCCATGT
CCGGATCGACGGTGGCGGTGACGCAGGCCGGGTCTATCGAGCCCAGCTTCTCGAACTCGAAAGGGACGTGGAAACGGACC
AGCTCGGACGCACCGAGTACGATTATGCCCGTGCGGAAGTAGCACGGCGGCTTTTCAGGGCAAGCGAACAGCAGGCTGAA
GTGTTGGACAGCCCGTCGCATGCCCACAGATGGCCGAAGCTCGTCATCGTCGCATTTCTTCCGCTCGCGAGCATTGGCCT
TTATGAGTTGCTGGGTTCGCCCGACCTACCATCGCAGCCGCTGCAGGCGCGGCTGGAAGATCCCGGCCAGAACCTCGCAA
TGCTGATCGTCAAGACAGAACGCCATCTTGCAAGCCGGCCCGATGACGGGCGGGGTTGGAACGTGATCGCCCCGGTTTAT
CTCAGGACCGGCCGGTTGCCCGAGGCGGAAATAGCTTATCGGAACGCCCTGCGGATCCTCGGCCCCGACATGGATCGGCT
GGGCGGTCTTGCCGAGGCCCTGATGGCCGAAGCGCAAGGTTCGGTGTCTGCGGATACGCTGGATGTCCTGCGGCAGATCC
TCCAGCTTGAGCCGAAAAACCCGCGCGCATTGTTCTACATCGCCCTCAGCTTCGAGCAGGCGGGGCGGCGTGCCGAGGCG
TTGGCAGATTTCGAGGCGCTGGCGAAATCGTCGCCGGCCGGGGCGCCCTGGCTGTCGCTCGTCAACAAACATATTGCCGC
CAATGGCGGGGTGCCGCTGATCGCCGTGGCGCGGGAGCCTCGCATGACAGATCAACGAGGTTCGCAATGA

Upstream 100 bases:

>100_bases
AAAGCTTGCTGAAGGCGGTAACCGCAATGCAATTTGACCGGCGTCAATGTGACGACCGCCCGCTCGGCTATGTTCAGCGG
CAAAAAGGCACCTGGACGTC

Downstream 100 bases:

>100_bases
CGCGCAAGCAGAAGCGCCTTGTGGTGATTGCTGGCGGGATGAGTTTCATCCTTGCTGCGGTGCTTTTGGTGATGTTCGCC
TTCAGCCAGTCGGTGGCCTA

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MLIWIVFAAVATAVVASLLHPLASSHVRIDGGGDAGRVYRAQLLELERDVETDQLGRTEYDYARAEVARRLFRASEQQAE
VLDSPSHAHRWPKLVIVAFLPLASIGLYELLGSPDLPSQPLQARLEDPGQNLAMLIVKTERHLASRPDDGRGWNVIAPVY
LRTGRLPEAEIAYRNALRILGPDMDRLGGLAEALMAEAQGSVSADTLDVLRQILQLEPKNPRALFYIALSFEQAGRRAEA
LADFEALAKSSPAGAPWLSLVNKHIAANGGVPLIAVAREPRMTDQRGSQ

Sequences:

>Translated_289_residues
MLIWIVFAAVATAVVASLLHPLASSHVRIDGGGDAGRVYRAQLLELERDVETDQLGRTEYDYARAEVARRLFRASEQQAE
VLDSPSHAHRWPKLVIVAFLPLASIGLYELLGSPDLPSQPLQARLEDPGQNLAMLIVKTERHLASRPDDGRGWNVIAPVY
LRTGRLPEAEIAYRNALRILGPDMDRLGGLAEALMAEAQGSVSADTLDVLRQILQLEPKNPRALFYIALSFEQAGRRAEA
LADFEALAKSSPAGAPWLSLVNKHIAANGGVPLIAVAREPRMTDQRGSQ
>Mature_289_residues
MLIWIVFAAVATAVVASLLHPLASSHVRIDGGGDAGRVYRAQLLELERDVETDQLGRTEYDYARAEVARRLFRASEQQAE
VLDSPSHAHRWPKLVIVAFLPLASIGLYELLGSPDLPSQPLQARLEDPGQNLAMLIVKTERHLASRPDDGRGWNVIAPVY
LRTGRLPEAEIAYRNALRILGPDMDRLGGLAEALMAEAQGSVSADTLDVLRQILQLEPKNPRALFYIALSFEQAGRRAEA
LADFEALAKSSPAGAPWLSLVNKHIAANGGVPLIAVAREPRMTDQRGSQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31558; Mature: 31558

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIWIVFAAVATAVVASLLHPLASSHVRIDGGGDAGRVYRAQLLELERDVETDQLGRTEY
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCHH
DYARAEVARRLFRASEQQAEVLDSPSHAHRWPKLVIVAFLPLASIGLYELLGSPDLPSQP
HHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LQARLEDPGQNLAMLIVKTERHLASRPDDGRGWNVIAPVYLRTGRLPEAEIAYRNALRIL
HHHHCCCCCCCEEEEEEECHHHHHCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHC
GPDMDRLGGLAEALMAEAQGSVSADTLDVLRQILQLEPKNPRALFYIALSFEQAGRRAEA
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHCHHHHH
LADFEALAKSSPAGAPWLSLVNKHIAANGGVPLIAVAREPRMTDQRGSQ
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLIWIVFAAVATAVVASLLHPLASSHVRIDGGGDAGRVYRAQLLELERDVETDQLGRTEY
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCHH
DYARAEVARRLFRASEQQAEVLDSPSHAHRWPKLVIVAFLPLASIGLYELLGSPDLPSQP
HHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LQARLEDPGQNLAMLIVKTERHLASRPDDGRGWNVIAPVYLRTGRLPEAEIAYRNALRIL
HHHHCCCCCCCEEEEEEECHHHHHCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHC
GPDMDRLGGLAEALMAEAQGSVSADTLDVLRQILQLEPKNPRALFYIALSFEQAGRRAEA
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHCHHHHH
LADFEALAKSSPAGAPWLSLVNKHIAANGGVPLIAVAREPRMTDQRGSQ
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]