| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is rbsA [H]
Identifier: 86361212
GI number: 86361212
Start: 543285
End: 544736
Strand: Direct
Name: rbsA [H]
Synonym: RHE_PF00482
Alternate gene names: 86361212
Gene position: 543285-544736 (Clockwise)
Preceding gene: 86361211
Following gene: 86361213
Centisome position: 84.56
GC content: 64.94
Gene sequence:
>1452_bases ATGGATGAGGTTTTGAAGGCGGTGATCGCCGTCGATGGCGCCAAGGTAAGCTTCGGCGCGGTCAGGGCACTCGACGGCGT CACGCTCCGCGTCATGCCGGGCGAATGCGTCGGGCTGGTCGGGCACAATGGGGCCGGCAAGTCCAGCATCGTCAACGTCA TCAATGGCGGCCTCACGCCCCATGAAGGAAGTGTGGCGAGCGATGGCGAGCGGCTGGAGCGTTACGGCATCAATGCGGCA CGCGCTCGCGGCGTGCGCTGCGTCTTCCAGGAGCTTTCGCTCTGCCCCAACCTCTCCATCGTCGAGAACACGCGCATCAT GCACCGCGATCTCGGCGGCTTCGGCTGGCGCAGGCGCGCCGCAAGGATCATCGAAAAGAGCCTCGATGCGGTCTTCCCCG GCCACAACATCGACAGCGGCCGGGCAGTGGGAGACCTTTCGATCGCCGAGCGACAGATGGTCGAGATCGCGATGGCCTTT TCCGACGCCGGCATTGCACCGCGGCTGGTGATCCTCGACGAACCGACCTCGTCGCTCGATGCGAGCCTCGCCCGCCAGAT GCTCGACCATGTCCGCCGCTTCGTCGCGGCCGGCGGCTCCGTCATCTTCATCTCGCACATCCTGCACGAGATCCTCGAAA CTTCGGACCGCATCGTCGTCATGAAGGACGGCCGCGTCGTTGCCGAACGTCCGGCAAGCGGCTTCGATCATCATCGTCTG GTCGAGGCCATGGGCACCGTTGCGAAGGAGGAGACGGGCCAGCGCCCGGCGCGCGAGCAATCCACCGCTACGCTCATTCT CTCCCATCAGACGGCGGGCCGTCCCTTTTCGGCGCGCAAGGGTGAGATCATCGGATTAGCGGGTCTCGCCGGCCACGGGC AGACCGAGCTGCTGCTCGCCCTGCATGCCGCCCAATCCCGCAACTGGCTGCCCGAGCGCGACCCGCTCGTCACCTTCGTC GCCGGCGACCGCCGCCTTAACGGCGTTTTCGAACTCTGGAGCATCTTGCGCAACTTTTCCGTCGCCTCGCTCGGTGACCT GTCGCGGCGCGGCCTCATTCTGGCTGATAAAGAGGAGAGCAAGGGCGCTGACTGGCAGCGGCGGATCGAGATCCGCACAC CCGACATGGCAAATCGCATATTGTCGCTTTCCGGCGGCAACCAGCAGAAAGTGCTCTTCGCGCGCGCCCTTGCCACGCGC GCGCCCGTCGTCCTGATGGACGATCCGATGCGCGGCGTCGACGTCGGGACCAAGCAGGAGGTGTACGCCATCATCCGCGA CGAAGCCTCGCGCGGCCGAACCTTTATCTGGTATTCGACTGAAATGGACGAGGTTCGCCTCTGCGACCGCGTCTACGTGT TTCGCGAAGGCAGAATCACTGCCGAACTCGCCGGTGACGCCGTGAACGAGACGAATATCATCGCCGCCTCCTTCGAAGGG GTCGCCGCATGA
Upstream 100 bases:
>100_bases AATCAAGGTCATCGAGCAGGCAAAGTAAATCTCCCGGCGACTGCCGCGCGACCGTAAATGGCCGCGCGGCATTCTTTGCG AGCAGGCATGGCGGGGCAGC
Downstream 100 bases:
>100_bases CGGCCCGGCTCTCGTCCGACGCCATGCGTCTTGCCATTCCCGCTTTGTCGCTGACCCTGCTGCTCGCCGCCGTCTTTTGG CTGCAGCCGCGCGCCATGAG
Product: sugar ABC transporter, ATP binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MDEVLKAVIAVDGAKVSFGAVRALDGVTLRVMPGECVGLVGHNGAGKSSIVNVINGGLTPHEGSVASDGERLERYGINAA RARGVRCVFQELSLCPNLSIVENTRIMHRDLGGFGWRRRAARIIEKSLDAVFPGHNIDSGRAVGDLSIAERQMVEIAMAF SDAGIAPRLVILDEPTSSLDASLARQMLDHVRRFVAAGGSVIFISHILHEILETSDRIVVMKDGRVVAERPASGFDHHRL VEAMGTVAKEETGQRPAREQSTATLILSHQTAGRPFSARKGEIIGLAGLAGHGQTELLLALHAAQSRNWLPERDPLVTFV AGDRRLNGVFELWSILRNFSVASLGDLSRRGLILADKEESKGADWQRRIEIRTPDMANRILSLSGGNQQKVLFARALATR APVVLMDDPMRGVDVGTKQEVYAIIRDEASRGRTFIWYSTEMDEVRLCDRVYVFREGRITAELAGDAVNETNIIAASFEG VAA
Sequences:
>Translated_483_residues MDEVLKAVIAVDGAKVSFGAVRALDGVTLRVMPGECVGLVGHNGAGKSSIVNVINGGLTPHEGSVASDGERLERYGINAA RARGVRCVFQELSLCPNLSIVENTRIMHRDLGGFGWRRRAARIIEKSLDAVFPGHNIDSGRAVGDLSIAERQMVEIAMAF SDAGIAPRLVILDEPTSSLDASLARQMLDHVRRFVAAGGSVIFISHILHEILETSDRIVVMKDGRVVAERPASGFDHHRL VEAMGTVAKEETGQRPAREQSTATLILSHQTAGRPFSARKGEIIGLAGLAGHGQTELLLALHAAQSRNWLPERDPLVTFV AGDRRLNGVFELWSILRNFSVASLGDLSRRGLILADKEESKGADWQRRIEIRTPDMANRILSLSGGNQQKVLFARALATR APVVLMDDPMRGVDVGTKQEVYAIIRDEASRGRTFIWYSTEMDEVRLCDRVYVFREGRITAELAGDAVNETNIIAASFEG VAA >Mature_483_residues MDEVLKAVIAVDGAKVSFGAVRALDGVTLRVMPGECVGLVGHNGAGKSSIVNVINGGLTPHEGSVASDGERLERYGINAA RARGVRCVFQELSLCPNLSIVENTRIMHRDLGGFGWRRRAARIIEKSLDAVFPGHNIDSGRAVGDLSIAERQMVEIAMAF SDAGIAPRLVILDEPTSSLDASLARQMLDHVRRFVAAGGSVIFISHILHEILETSDRIVVMKDGRVVAERPASGFDHHRL VEAMGTVAKEETGQRPAREQSTATLILSHQTAGRPFSARKGEIIGLAGLAGHGQTELLLALHAAQSRNWLPERDPLVTFV AGDRRLNGVFELWSILRNFSVASLGDLSRRGLILADKEESKGADWQRRIEIRTPDMANRILSLSGGNQQKVLFARALATR APVVLMDDPMRGVDVGTKQEVYAIIRDEASRGRTFIWYSTEMDEVRLCDRVYVFREGRITAELAGDAVNETNIIAASFEG VAA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI42741659, Length=217, Percent_Identity=29.4930875576037, Blast_Score=73, Evalue=7e-13, Organism=Homo sapiens, GI21536376, Length=221, Percent_Identity=25.7918552036199, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=28.6384976525822, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=28.6384976525822, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI27436953, Length=209, Percent_Identity=24.4019138755981, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI156105685, Length=204, Percent_Identity=31.8627450980392, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI105990541, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1790190, Length=501, Percent_Identity=32.7345309381238, Blast_Score=254, Evalue=8e-69, Organism=Escherichia coli, GI1789991, Length=508, Percent_Identity=32.0866141732283, Blast_Score=227, Evalue=1e-60, Organism=Escherichia coli, GI1790525, Length=509, Percent_Identity=31.6306483300589, Blast_Score=225, Evalue=4e-60, Organism=Escherichia coli, GI1788210, Length=490, Percent_Identity=31.6326530612245, Blast_Score=213, Evalue=3e-56, Organism=Escherichia coli, GI1788472, Length=500, Percent_Identity=29, Blast_Score=208, Evalue=6e-55, Organism=Escherichia coli, GI48995001, Length=487, Percent_Identity=30.8008213552361, Blast_Score=203, Evalue=2e-53, Organism=Escherichia coli, GI1788897, Length=502, Percent_Identity=29.2828685258964, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1787792, Length=498, Percent_Identity=30.5220883534137, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1788506, Length=527, Percent_Identity=25.6166982922201, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1787370, Length=244, Percent_Identity=29.5081967213115, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1787089, Length=241, Percent_Identity=27.3858921161826, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787712, Length=221, Percent_Identity=30.316742081448, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=25.8333333333333, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=28.2051282051282, Blast_Score=86, Evalue=6e-18, Organism=Escherichia coli, GI1788165, Length=252, Percent_Identity=28.1746031746032, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1786872, Length=201, Percent_Identity=26.865671641791, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1789032, Length=205, Percent_Identity=30.2439024390244, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1788761, Length=258, Percent_Identity=28.2945736434109, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=30.0448430493274, Blast_Score=82, Evalue=9e-17, Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=32.8767123287671, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=215, Percent_Identity=30.2325581395349, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082268, Length=222, Percent_Identity=25.2252252252252, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1787759, Length=250, Percent_Identity=31.6, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=30.8056872037915, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=24.4725738396624, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1787548, Length=246, Percent_Identity=29.6747967479675, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1790544, Length=276, Percent_Identity=27.536231884058, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=30.6306306306306, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=227, Percent_Identity=30.8370044052863, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=30.1980198019802, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=26.1904761904762, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1787758, Length=214, Percent_Identity=30.8411214953271, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=30.0469483568075, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=27.9475982532751, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87081791, Length=241, Percent_Identity=24.896265560166, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=250, Percent_Identity=31.2, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786803, Length=219, Percent_Identity=24.6575342465753, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87082267, Length=234, Percent_Identity=28.6324786324786, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=27.8969957081545, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI145693107, Length=258, Percent_Identity=28.6821705426357, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=29.9539170506912, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=29.1866028708134, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789751, Length=261, Percent_Identity=25.2873563218391, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI48994883, Length=240, Percent_Identity=27.9166666666667, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790739, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI2367384, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=27.8260869565217, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=32.2274881516588, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17510237, Length=224, Percent_Identity=26.3392857142857, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565586, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567265, Length=239, Percent_Identity=30.9623430962343, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=249, Percent_Identity=28.1124497991968, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17541710, Length=238, Percent_Identity=31.0924369747899, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115535101, Length=214, Percent_Identity=29.4392523364486, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71988343, Length=232, Percent_Identity=25, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=27.3148148148148, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533592, Length=230, Percent_Identity=29.5652173913043, Blast_Score=65, Evalue=1e-10, Organism=Drosophila melanogaster, GI17136662, Length=248, Percent_Identity=28.6290322580645, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007184, Length=206, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI221500365, Length=206, Percent_Identity=28.1553398058252, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24653245, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI281363262, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI221512771, Length=216, Percent_Identity=23.6111111111111, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=22.9074889867841, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641565, Length=207, Percent_Identity=32.3671497584541, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=227, Percent_Identity=29.9559471365639, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 52508; Mature: 52508
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEVLKAVIAVDGAKVSFGAVRALDGVTLRVMPGECVGLVGHNGAGKSSIVNVINGGLTP CHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCC HEGSVASDGERLERYGINAARARGVRCVFQELSLCPNLSIVENTRIMHRDLGGFGWRRRA CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCHHHHHH ARIIEKSLDAVFPGHNIDSGRAVGDLSIAERQMVEIAMAFSDAGIAPRLVILDEPTSSLD HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH ASLARQMLDHVRRFVAAGGSVIFISHILHEILETSDRIVVMKDGRVVAERPASGFDHHRL HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCHHHHH VEAMGTVAKEETGQRPAREQSTATLILSHQTAGRPFSARKGEIIGLAGLAGHGQTELLLA HHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHEEHE LHAAQSRNWLPERDPLVTFVAGDRRLNGVFELWSILRNFSVASLGDLSRRGLILADKEES EHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHCCCHHHCCEEEECCCCC KGADWQRRIEIRTPDMANRILSLSGGNQQKVLFARALATRAPVVLMDDPMRGVDVGTKQE CCCCCEEEEEEECCHHHHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH VYAIIRDEASRGRTFIWYSTEMDEVRLCDRVYVFREGRITAELAGDAVNETNIIAASFEG HHEEEECCCCCCCEEEEEECCCHHHHHHHEEEEEECCCEEEEECCCCCCCCEEEEEECCC VAA CCC >Mature Secondary Structure MDEVLKAVIAVDGAKVSFGAVRALDGVTLRVMPGECVGLVGHNGAGKSSIVNVINGGLTP CHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCC HEGSVASDGERLERYGINAARARGVRCVFQELSLCPNLSIVENTRIMHRDLGGFGWRRRA CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCHHHHHH ARIIEKSLDAVFPGHNIDSGRAVGDLSIAERQMVEIAMAFSDAGIAPRLVILDEPTSSLD HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH ASLARQMLDHVRRFVAAGGSVIFISHILHEILETSDRIVVMKDGRVVAERPASGFDHHRL HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCHHHHH VEAMGTVAKEETGQRPAREQSTATLILSHQTAGRPFSARKGEIIGLAGLAGHGQTELLLA HHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHEEHE LHAAQSRNWLPERDPLVTFVAGDRRLNGVFELWSILRNFSVASLGDLSRRGLILADKEES EHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHCCCHHHCCEEEECCCCC KGADWQRRIEIRTPDMANRILSLSGGNQQKVLFARALATRAPVVLMDDPMRGVDVGTKQE CCCCCEEEEEEECCHHHHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH VYAIIRDEASRGRTFIWYSTEMDEVRLCDRVYVFREGRITAELAGDAVNETNIIAASFEG HHEEEECCCCCCCEEEEEECCCHHHHHHHEEEEEECCCEEEEECCCCCCCCEEEEEECCC VAA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA