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The map label for this gene is rbsB [H]

Identifier: 86361211

GI number: 86361211

Start: 542196

End: 543212

Strand: Direct

Name: rbsB [H]

Synonym: RHE_PF00481

Alternate gene names: 86361211

Gene position: 542196-543212 (Clockwise)

Preceding gene: 86361208

Following gene: 86361212

Centisome position: 84.39

GC content: 62.73

Gene sequence:

>1017_bases
ATGACAATCCGTAAGATGCTTCTGGCATCGGCCGCTATTGCTTGCGCCGCCATGCCCGTTTCCGCCTTTGCCGACACGTC
GGCCAAGAAGATCGCCCTTTCCAACAACTACGCCGGAAACTCCTGGCGCCAGGCCATGCTGACGAGCTGGGGCAAGGTGA
CGAGCGAGGCCGTGAAGGCTGGCGTCGTTGCCGCCGCCGACCCTTTCACCACCGCCGAAAACCAGGCGACAGAACAGGCG
GCGCAGATCCAGAACATGATCCTGCAGGGCTATGACGCGATCGTGCTGAACGCCGCCTCGCCGACGGCGCTGAACGGCGC
CGTCAAGGAAGCCTGCGACGCCGGCATTACAGTCGTTTCCTTCGACGGCATCGTGACCGAACCCTGCGCCTGGCGTATCG
CCGTCAATTTCAAGGAAATGGGCCGCAGCGAGGTCGAGTATCTATCGAAGAAACTCCCGCAGGGCGGCAATCTGCTCGAG
ATCCGCGGCCTTGCCGGTGTCTTCGTCGATGACGAGATCTCGGCCGGCATCCATGAGGGCGTCAAGCAGTTCCCGCAGTT
CAAGGTGGTCGGCTCCGTGCATGGCGACTGGGCGCAGGACGTGGCGCAGAAGGCGGTCGCGGGCATCCTGCCGAGTCTGC
CCGACATCGTCGGAGTGGTGACGCAGGGTGGCGACGGCTATGGCGCCGCGCAGGCGATCGCCGCGACCGACCGCAAGATG
CCGATCATCATCATGGGCAACCGCGAAGATGAGCTGAAGTGGTGGAAGGAGCAGAAGGACGCGAAGGGCTACGAGACTAT
GTCCGTCTCAATCGCGCCCGGCGTCTCCACGCTCGCCTTCTGGGTCGCCCAGCAGATCCTTGACGGCAAGCAGGTCAAGA
AGGACCTCGTGGTGCCCTTCCTGCGCATCGACCAGGACAATCTTGAAACGAACCTCGCCAATACCCAGGCCGGCGGCGTC
GCCAACGTGGAATACACGCAGGCTGATGCAATCAAGGTCATCGAGCAGGCAAAGTAA

Upstream 100 bases:

>100_bases
AGGAGGAAGCTCAGTGCAAGAACAATTTTCACTCGGGGCCCGCTTGAGCCGGCAGGAGTGAAGCGATCCGCCGACCGGCG
CGATCATGAGGGAGGAAGAG

Downstream 100 bases:

>100_bases
ATCTCCCGGCGACTGCCGCGCGACCGTAAATGGCCGCGCGGCATTCTTTGCGAGCAGGCATGGCGGGGCAGCATGGATGA
GGTTTTGAAGGCGGTGATCG

Product: sugar ABC transporter, substrate-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTIRKMLLASAAIACAAMPVSAFADTSAKKIALSNNYAGNSWRQAMLTSWGKVTSEAVKAGVVAAADPFTTAENQATEQA
AQIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVSFDGIVTEPCAWRIAVNFKEMGRSEVEYLSKKLPQGGNLLE
IRGLAGVFVDDEISAGIHEGVKQFPQFKVVGSVHGDWAQDVAQKAVAGILPSLPDIVGVVTQGGDGYGAAQAIAATDRKM
PIIIMGNREDELKWWKEQKDAKGYETMSVSIAPGVSTLAFWVAQQILDGKQVKKDLVVPFLRIDQDNLETNLANTQAGGV
ANVEYTQADAIKVIEQAK

Sequences:

>Translated_338_residues
MTIRKMLLASAAIACAAMPVSAFADTSAKKIALSNNYAGNSWRQAMLTSWGKVTSEAVKAGVVAAADPFTTAENQATEQA
AQIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVSFDGIVTEPCAWRIAVNFKEMGRSEVEYLSKKLPQGGNLLE
IRGLAGVFVDDEISAGIHEGVKQFPQFKVVGSVHGDWAQDVAQKAVAGILPSLPDIVGVVTQGGDGYGAAQAIAATDRKM
PIIIMGNREDELKWWKEQKDAKGYETMSVSIAPGVSTLAFWVAQQILDGKQVKKDLVVPFLRIDQDNLETNLANTQAGGV
ANVEYTQADAIKVIEQAK
>Mature_337_residues
TIRKMLLASAAIACAAMPVSAFADTSAKKIALSNNYAGNSWRQAMLTSWGKVTSEAVKAGVVAAADPFTTAENQATEQAA
QIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVSFDGIVTEPCAWRIAVNFKEMGRSEVEYLSKKLPQGGNLLEI
RGLAGVFVDDEISAGIHEGVKQFPQFKVVGSVHGDWAQDVAQKAVAGILPSLPDIVGVVTQGGDGYGAAQAIAATDRKMP
IIIMGNREDELKWWKEQKDAKGYETMSVSIAPGVSTLAFWVAQQILDGKQVKKDLVVPFLRIDQDNLETNLANTQAGGVA
NVEYTQADAIKVIEQAK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35899; Mature: 35768

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRKMLLASAAIACAAMPVSAFADTSAKKIALSNNYAGNSWRQAMLTSWGKVTSEAVKA
CCHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
GVVAAADPFTTAENQATEQAAQIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVS
CEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE
FDGIVTEPCAWRIAVNFKEMGRSEVEYLSKKLPQGGNLLEIRGLAGVFVDDEISAGIHEG
ECCEEECCCEEEEEECHHHCCHHHHHHHHHHCCCCCCEEEEECCEEEEECCHHHHHHHHH
VKQFPQFKVVGSVHGDWAQDVAQKAVAGILPSLPDIVGVVTQGGDGYGAAQAIAATDRKM
HHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCHHHHHHHCCCCC
PIIIMGNREDELKWWKEQKDAKGYETMSVSIAPGVSTLAFWVAQQILDGKQVKKDLVVPF
CEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHCHH
LRIDQDNLETNLANTQAGGVANVEYTQADAIKVIEQAK
EEECCCHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCC
>Mature Secondary Structure 
TIRKMLLASAAIACAAMPVSAFADTSAKKIALSNNYAGNSWRQAMLTSWGKVTSEAVKA
CHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
GVVAAADPFTTAENQATEQAAQIQNMILQGYDAIVLNAASPTALNGAVKEACDAGITVVS
CEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE
FDGIVTEPCAWRIAVNFKEMGRSEVEYLSKKLPQGGNLLEIRGLAGVFVDDEISAGIHEG
ECCEEECCCEEEEEECHHHCCHHHHHHHHHHCCCCCCEEEEECCEEEEECCHHHHHHHHH
VKQFPQFKVVGSVHGDWAQDVAQKAVAGILPSLPDIVGVVTQGGDGYGAAQAIAATDRKM
HHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCHHHHHHHCCCCC
PIIIMGNREDELKWWKEQKDAKGYETMSVSIAPGVSTLAFWVAQQILDGKQVKKDLVVPF
CEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHCHH
LRIDQDNLETNLANTQAGGVANVEYTQADAIKVIEQAK
EEECCCHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]