Click here to switch to the map view.

The map label for this gene is hspD [H]

Identifier: 86361202

GI number: 86361202

Start: 532575

End: 533246

Strand: Reverse

Name: hspD [H]

Synonym: RHE_PF00472

Alternate gene names: 86361202

Gene position: 533246-532575 (Counterclockwise)

Preceding gene: 86361203

Following gene: 86361199

Centisome position: 82.99

GC content: 55.95

Gene sequence:

>672_bases
GTGAATGAAAACAGTGATCAAGAGGCTTTTCCAGCCTGTCGGATAAAGCAGGCTGAATATTTTAAGATTCTGCTCTTGAA
TCGAAAATCCTGCGAAACCAGATCATTTTCGTCGGCAGCGCAAAAGCGGGCCGATGATCAGAGCGGAGGCGCAGGTTTCC
GACGCGTCTCCATCCCATGTTGCTTTACGGAGGATATGGCTATGAGAAACGAACTTGACTTCGCCCCCCTTTATCGATCC
AGCATCGGCTTTGACCGTGTCTTCAATCTCCTGAACAATGCGCAGCGCCTGCAGGCGATCGATGCCTGGCCGCCCTATGA
CATTGTCAAGACGGGCGAAGACGACTATCGCATTCAGATGGCAGTGGCCGGCTTCGCCGAAGGCGACCTCGACATCACCC
AGGAGCGGAACGTCCTTCTGGTGAAGGGGCAACGGGCCGAAGGGAAGGACGGCGAATATCTGCATCGCGGCATCGCCGGG
CGCGCATTTGAACGCCGCTTCGAGCTCGCCGATCACGTCAGGGTCGAGAATGCCTCGCTGAGGCATGGTATTCTCTCGAT
TGCGCTGAAGCGTGAAGTGCCCGAAGCCATGAAACCGCGCAAGATCGTTATCGGTGACGGCTCCTTTCAGCAGGCGCCTC
TTCAGATCGAATCCGAGCGTCAGGTGGCTTAA

Upstream 100 bases:

>100_bases
GACATAAGATCCGTGATCGACCTGCCGTTGCCAGCCGGCTACATGCAGCCGCCGTCGACTGCATGACTCATATCGAAACG
GTCACGCGCCATCGATTTAG

Downstream 100 bases:

>100_bases
GGAGAGCCTCTCCATGAAGTCCCGGATAAAGCCGTTTATCGTAGAGATCAGGAAACGTCGCGGAAGCAGCGCAAAAAACG
CGGCAAAGTCTCTGTTTTCG

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNENSDQEAFPACRIKQAEYFKILLLNRKSCETRSFSSAAQKRADDQSGGAGFRRVSIPCCFTEDMAMRNELDFAPLYRS
SIGFDRVFNLLNNAQRLQAIDAWPPYDIVKTGEDDYRIQMAVAGFAEGDLDITQERNVLLVKGQRAEGKDGEYLHRGIAG
RAFERRFELADHVRVENASLRHGILSIALKREVPEAMKPRKIVIGDGSFQQAPLQIESERQVA

Sequences:

>Translated_223_residues
MNENSDQEAFPACRIKQAEYFKILLLNRKSCETRSFSSAAQKRADDQSGGAGFRRVSIPCCFTEDMAMRNELDFAPLYRS
SIGFDRVFNLLNNAQRLQAIDAWPPYDIVKTGEDDYRIQMAVAGFAEGDLDITQERNVLLVKGQRAEGKDGEYLHRGIAG
RAFERRFELADHVRVENASLRHGILSIALKREVPEAMKPRKIVIGDGSFQQAPLQIESERQVA
>Mature_223_residues
MNENSDQEAFPACRIKQAEYFKILLLNRKSCETRSFSSAAQKRADDQSGGAGFRRVSIPCCFTEDMAMRNELDFAPLYRS
SIGFDRVFNLLNNAQRLQAIDAWPPYDIVKTGEDDYRIQMAVAGFAEGDLDITQERNVLLVKGQRAEGKDGEYLHRGIAG
RAFERRFELADHVRVENASLRHGILSIALKREVPEAMKPRKIVIGDGSFQQAPLQIESERQVA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=139, Percent_Identity=52.5179856115108, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082316, Length=140, Percent_Identity=39.2857142857143, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 25201; Mature: 25201

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENSDQEAFPACRIKQAEYFKILLLNRKSCETRSFSSAAQKRADDQSGGAGFRRVSIPC
CCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCE
CFTEDMAMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDAWPPYDIVKTGEDDYRIQM
EECHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCHHHHEEECCCCCCCEEECCCCCEEEEE
AVAGFAEGDLDITQERNVLLVKGQRAEGKDGEYLHRGIAGRAFERRFELADHVRVENASL
EEECCCCCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHH
RHGILSIALKREVPEAMKPRKIVIGDGSFQQAPLQIESERQVA
HHHHHHHHHHHHCHHHHCCCEEEEECCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MNENSDQEAFPACRIKQAEYFKILLLNRKSCETRSFSSAAQKRADDQSGGAGFRRVSIPC
CCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCE
CFTEDMAMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDAWPPYDIVKTGEDDYRIQM
EECHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCHHHHEEECCCCCCCEEECCCCCEEEEE
AVAGFAEGDLDITQERNVLLVKGQRAEGKDGEYLHRGIAGRAFERRFELADHVRVENASL
EEECCCCCCCEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHH
RHGILSIALKREVPEAMKPRKIVIGDGSFQQAPLQIESERQVA
HHHHHHHHHHHHCHHHHCCCEEEEECCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]