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The map label for this gene is raiR

Identifier: 86361169

GI number: 86361169

Start: 491883

End: 492608

Strand: Reverse

Name: raiR

Synonym: RHE_PF00439

Alternate gene names: 86361169

Gene position: 492608-491883 (Counterclockwise)

Preceding gene: 86361170

Following gene: 86361167

Centisome position: 76.67

GC content: 59.92

Gene sequence:

>726_bases
ATGCTGAGCAGTTCTCGTTTTTTCTACTGTCTGGACCGGATCTCCGCGTCGCCGACATTGCAGGATCTGGAAACAGCGCT
GGACGAAGTCCGCCACATCTATGCGATATCGCATATGGTTTTGCATGTGACCCGTTCATCGGGGGCAACGGTCAGCAATC
CATTGCTGATGCTGACCTATCCGCCCGAGTGGGTGAAACAATATCGTGACCGGGACTACTTCAGCATCGATCCGGTCGTG
CGTCTGGGCCGGCGCGGCTTCCTGCCCGTGGAATGGTCCGCATCAAAATGGGATTCAGGCCGAGCCTATGGCTTTTTCAA
GGAGGCGATGGCCTTCGGTGTCGGCCGGCAAGGCGTTACCCTGCCGGTGCGGGGACCTCAGGGGGAGCGATCGCTGTTTA
CCGTGACCTCCAATCACCCCGACGCCTATTGGCGGCAGTTCCGTATGGACTGCATGCGCGACCTCCAGTTTCTCGCCCAT
CATCTCCACGACAGGGCCATGGTGCTGGCCGGCATGAGGGAGATTGCGGATGTTGCGCATTTGTCGCGCCGCGAACTGCA
ATGTCTGGAGATGACGGCCAGCGGCTTTCTGGCAAAGCAGATTTCCGCCCGGTTGTGCATTTCGATCAGTGCGGTGCAGC
TCTATCTCGCCTCGGCGCGCCGGAAGCTGACCGTTGCCACCACGAGCGAGGCGGTCGCCAAGGCCACTGCGCTGGAGTTG
ATCTAG

Upstream 100 bases:

>100_bases
ATGTCGCGTCATGGTTGCCACAAAAAGCTGCTGTTCTCGGTAATCGGGAAATGTTACCATGGCGAGCAGTTATGAAACAA
CGCAACCACGAGTCCATCTC

Downstream 100 bases:

>100_bases
GCTAAGCGGATGGCGGTTCAGCGCCTCCCCCGCGTGCGCGTCGCCAGAACATTGCGGATCGAGAAGCTGGAATGAATCCG
GAGGACGCCGGGCAAGGTCG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLSSSRFFYCLDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAH
HLHDRAMVLAGMREIADVAHLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALEL
I

Sequences:

>Translated_241_residues
MLSSSRFFYCLDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAH
HLHDRAMVLAGMREIADVAHLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALEL
I
>Mature_241_residues
MLSSSRFFYCLDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAH
HLHDRAMVLAGMREIADVAHLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALEL
I

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27247; Mature: 27247

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSSRFFYCLDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTY
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCEEEEEC
PPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVT
CHHHHHHHHCCCCEEECHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAGMREIADVAH
EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHC
I
C
>Mature Secondary Structure
MLSSSRFFYCLDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTY
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCEEEEEC
PPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVT
CHHHHHHHHCCCCEEECHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAGMREIADVAH
EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]