Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 86361147

GI number: 86361147

Start: 470701

End: 472614

Strand: Reverse

Name: cph2 [H]

Synonym: RHE_PF00417

Alternate gene names: 86361147

Gene position: 472614-470701 (Counterclockwise)

Preceding gene: 86361157

Following gene: 86361146

Centisome position: 73.56

GC content: 60.29

Gene sequence:

>1914_bases
ATGGTTTGGGAAGGTGGATCCAACGCGGTGAATGGCATCTGGACGCAATTCGGTGGCAACCTTTCCTTCGTATCCCTGGC
AATGTCGCTCTGGGCGCTCTTTTCGATTCAGTTTCAGCGCCGGTCCTTCATGCAGGAGAGGATCGCCTTCGGAATCATAG
CCGGCGGCGCCTCCATCGGATCGATATTGCTGGCTGTTGAGTTTCATCCGGGCATCTATATCGATCTGCGATTTTCGCCG
CTTGCATTGGCTGGCATGTTCGGTGGGCCGATCGCGGCGGCTTTTGCGGCATCGCTGGCGATGGCCTTTCGATTTGCCGT
CGGCGGCACGGCGATGGTCGACGGGATTGTCACGATGGCTGTGGCTGCCGGCATTGGTGTGGCCGGCCATTTCTGGACCC
GCAAGAGATCTCCGGTGCTCATGGACGTTGCGTTGCTGAGCCTCGCCCTTGGCGGCGCGCTGGTCGCATCGATGGCTCTG
CTTCCCACTCTGGTGACCGCTCATGTGCTGGCCGGCGTCGGTTTTCCCCTGACGGCCTTGAATTGTCTGGCGACCGTGCT
GGGCGGTTTTGTGCTCTTGAAGACGCAGCAATGGGAACTCGAACGCAGCATTTTGGTGACGGCTTTTTCGCAATCGCCCG
ACTATCTCTATGTGAAGGACCGAAACAGCCGGTTCATCACCGTCAATGAAAACATGACCCGCCTCTTCCGTTTCAGAACG
ACGGCGGAGATGACCGGATTGTCGGATTTCAATCTGATGTCGCAGCCGCTGGCTGAAGAATTGTATCATCTCGAGCAGCA
GGTGATGGAGACGGGGACGCCGCTGATCGACTCCAACGAGCGGATCGAAGGCCGCTTCCTGCTCGCTTCCAAGGTGCCGC
TCAGGGACAAGCAGGGACGGATCATCGGTCTTGCGGGCGTGACGCGCGACGTGACCGAGCGCACAGCACTGGAGCGGGAG
CTGCGCGAAAGCAAGAACCTGCTGTCGCATGCGATGGCGAACATGTCCGATGGCATCGCCATGTACGACAGCAAAGGCTT
TCTTGTCTTTTGCAACGAACAGTACCGCGACGCCTTTCCGCTCTCCGGAGATGCCCGCGTGGTCGGCGCGCATATCAGCG
ACATCCTGCGCCGCGTCGTCGAAACCGGCGAGCGCCCCGCTATTACAGAGGTTGATACGGAAGTGTGGATCAAGACCGCA
GCCGCTTCCCTGCACAGCAATAAGGATGAGGAGGTTCAGCTTCACAATGGTGATTGGCGCAGCATCCGCACAAGGATTGC
CGGAGACGGCACGGCGATGGCCGTCGTCTCGGACATCACGGCGACGAAACAGGCGGAGATCGCGCTCAGGCTGTCGGCGG
AGCAATTGAAGAATCTTGCCGAGACCGACGGGCTCACCGGCATTGTCAATCGCCGCGCTTTCGACGAGGCCTTCGCGCGT
GAGACGGCGGGCAGCGCCAGGAAAAATACGCCTTTCAGCCTGCTGATGGTCGATATCGACCGCTTCAAAGCCTATAACGA
TACCTATGGCCATCCCGCCGGCGACCAATGCCTGCGCGTCGTCAGCAAGTGTCTGCGCCAGTCCGTCAGTCGGCCGGCGG
ACATCGTTGCGCGCTACGGCGGAGAGGAATTCGCCGTGTTCCTTCCCGACACCAGCGCCAAGGGCGCGATGATCGTTGCC
GAACAATTCGCGCGTCGCCTTGCACAGGAGAATATCGTTCATTCCGGCAGCGAATTCGGGCGGGTCACCGCCAGCATCGG
CATATCCTGCGCCACAGGCGCGACCCTGCGGACCAGCCCGAACCGGCTTTTAGCCGAGGCCGATGCCGCGCTCTATGAGG
CCAAAACGCAAGGCCGAAACCGTATTCTGGCGCATTCCCGCGAGAACGGGCATGCCCTTAAGGAAACCGGTTAG

Upstream 100 bases:

>100_bases
TAGGAGAGCGCGATATCCGATGCATTAGCCGGTGAATGGCGTATCCAGCTGCCCGATTTAACGAAGCCCAAACCACTCTG
TCGTATGACAGAGTGGTTAC

Downstream 100 bases:

>100_bases
GGTCCGCGCTCGATAGGTTTCTTCTATCGAGCCATCGTTCGTACACCCTTGATGTTTAGCGCCCTTCAACAATACAGGGC
GCATGGACACAAAATTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MVWEGGSNAVNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSFMQERIAFGIIAGGASIGSILLAVEFHPGIYIDLRFSP
LALAGMFGGPIAAAFAASLAMAFRFAVGGTAMVDGIVTMAVAAGIGVAGHFWTRKRSPVLMDVALLSLALGGALVASMAL
LPTLVTAHVLAGVGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRT
TAEMTGLSDFNLMSQPLAEELYHLEQQVMETGTPLIDSNERIEGRFLLASKVPLRDKQGRIIGLAGVTRDVTERTALERE
LRESKNLLSHAMANMSDGIAMYDSKGFLVFCNEQYRDAFPLSGDARVVGAHISDILRRVVETGERPAITEVDTEVWIKTA
AASLHSNKDEEVQLHNGDWRSIRTRIAGDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFAR
ETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPDTSAKGAMIVA
EQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSPNRLLAEADAALYEAKTQGRNRILAHSRENGHALKETG

Sequences:

>Translated_637_residues
MVWEGGSNAVNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSFMQERIAFGIIAGGASIGSILLAVEFHPGIYIDLRFSP
LALAGMFGGPIAAAFAASLAMAFRFAVGGTAMVDGIVTMAVAAGIGVAGHFWTRKRSPVLMDVALLSLALGGALVASMAL
LPTLVTAHVLAGVGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRT
TAEMTGLSDFNLMSQPLAEELYHLEQQVMETGTPLIDSNERIEGRFLLASKVPLRDKQGRIIGLAGVTRDVTERTALERE
LRESKNLLSHAMANMSDGIAMYDSKGFLVFCNEQYRDAFPLSGDARVVGAHISDILRRVVETGERPAITEVDTEVWIKTA
AASLHSNKDEEVQLHNGDWRSIRTRIAGDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFAR
ETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPDTSAKGAMIVA
EQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSPNRLLAEADAALYEAKTQGRNRILAHSRENGHALKETG
>Mature_637_residues
MVWEGGSNAVNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSFMQERIAFGIIAGGASIGSILLAVEFHPGIYIDLRFSP
LALAGMFGGPIAAAFAASLAMAFRFAVGGTAMVDGIVTMAVAAGIGVAGHFWTRKRSPVLMDVALLSLALGGALVASMAL
LPTLVTAHVLAGVGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRT
TAEMTGLSDFNLMSQPLAEELYHLEQQVMETGTPLIDSNERIEGRFLLASKVPLRDKQGRIIGLAGVTRDVTERTALERE
LRESKNLLSHAMANMSDGIAMYDSKGFLVFCNEQYRDAFPLSGDARVVGAHISDILRRVVETGERPAITEVDTEVWIKTA
AASLHSNKDEEVQLHNGDWRSIRTRIAGDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFAR
ETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPDTSAKGAMIVA
EQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSPNRLLAEADAALYEAKTQGRNRILAHSRENGHALKETG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=217, Percent_Identity=36.8663594470046, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787262, Length=185, Percent_Identity=40, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=39.375, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=34.9462365591398, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788381, Length=351, Percent_Identity=26.7806267806268, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=39.2638036809816, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=32.9411764705882, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788085, Length=180, Percent_Identity=33.8888888888889, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=33.9181286549708, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=207, Percent_Identity=31.4009661835749, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 69124; Mature: 69124

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWEGGSNAVNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSFMQERIAFGIIAGGASIG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
SILLAVEFHPGIYIDLRFSPLALAGMFGGPIAAAFAASLAMAFRFAVGGTAMVDGIVTMA
EEEEEEEECCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VAAGIGVAGHFWTRKRSPVLMDVALLSLALGGALVASMALLPTLVTAHVLAGVGFPLTAL
HHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
NCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRT
HHHHHHHCCEEEEECCHHHHCCEEEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHH
TAEMTGLSDFNLMSQPLAEELYHLEQQVMETGTPLIDSNERIEGRFLLASKVPLRDKQGR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
IIGLAGVTRDVTERTALERELRESKNLLSHAMANMSDGIAMYDSKGFLVFCNEQYRDAFP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCC
LSGDARVVGAHISDILRRVVETGERPAITEVDTEVWIKTAAASLHSNKDEEVQLHNGDWR
CCCCCEEEHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHH
SIRTRIAGDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFAR
HHHHHHCCCCCEEEEEHHHHHCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYG
HHCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCC
GEEFAVFLPDTSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSP
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEHHHCCEEECCCCEEECCC
NRLLAEADAALYEAKTQGRNRILAHSRENGHALKETG
CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MVWEGGSNAVNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSFMQERIAFGIIAGGASIG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
SILLAVEFHPGIYIDLRFSPLALAGMFGGPIAAAFAASLAMAFRFAVGGTAMVDGIVTMA
EEEEEEEECCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VAAGIGVAGHFWTRKRSPVLMDVALLSLALGGALVASMALLPTLVTAHVLAGVGFPLTAL
HHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
NCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRT
HHHHHHHCCEEEEECCHHHHCCEEEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHH
TAEMTGLSDFNLMSQPLAEELYHLEQQVMETGTPLIDSNERIEGRFLLASKVPLRDKQGR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
IIGLAGVTRDVTERTALERELRESKNLLSHAMANMSDGIAMYDSKGFLVFCNEQYRDAFP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCC
LSGDARVVGAHISDILRRVVETGERPAITEVDTEVWIKTAAASLHSNKDEEVQLHNGDWR
CCCCCEEEHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHH
SIRTRIAGDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEAFAR
HHHHHHCCCCCEEEEEHHHHHCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYG
HHCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCC
GEEFAVFLPDTSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGATLRTSP
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEHHHCCEEECCCCEEECCC
NRLLAEADAALYEAKTQGRNRILAHSRENGHALKETG
CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]