| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86361136
Identifier: 86361136
GI number: 86361136
Start: 458466
End: 459071
Strand: Reverse
Name: 86361136
Synonym: RHE_PF00406
Alternate gene names: NA
Gene position: 459071-458466 (Counterclockwise)
Preceding gene: 86361137
Following gene: 86361135
Centisome position: 71.45
GC content: 61.22
Gene sequence:
>606_bases ATGAGTTTGCGCAACGGAAGCCTCCAGCATTTCCTGGAAGCCGCTTCGGTCGCTTTCGGCCAGTTCGCCAGGGCTCCGGA AGCCCGCCGCTCGATCGGGCAGTTCTTCGCGGCGCTGGAGCGTCCGGGGACTGCGCGCGCGGGAGAGGGAAGCCGACTAC CGGTCTGCGCTCACCTCGATATGGTGCTCGCGGTCGATACGTCCTATGCTTCGCTGGCGCGATTGATCGAGGGGTTCAAA GGCATCGAGCCAATGCTTGAATGGCGTCGCCGCACAAAGTATGACCACACCACGGCCAGCGACAATTTCGTTGATGGGCA TGCCAACGCCATGATCGTCGGGCCGGGTGGATTGGAGGAGCGAAGTGACCTGTGGTTCGGCGTGACATTGATGGCGCCTC ACGTGCGCTATCCCGATCACGACCATGCGCCGGAGGAAGTCTATCTCGTGCTGTCCAAGGGAGAGTTCCAGCAGGGGGAG GGGAACTGGTTTTCGCCCGGTATCGGCGGATCGTTCTATAATATTCCCGGGATCAAACATGCCATGAGGTCGCTGGAGAC GCCGCTCTTCGCCTTCTGGGCGTTGCTTGCTGAGCGGTCGCATTGA
Upstream 100 bases:
>100_bases TGCCCGCAACACGCATGCCGCGGTCTATGACGGTCTGCGCATCGCAAAGGATATATGATCGCAAGAGAGGCCGCCTGTCG GCCGATCGGGAGGGAATGAT
Downstream 100 bases:
>100_bases CGGCCGGCTGTCTAAAGCATGTCGCGCAAAGCTGGGCGGCGGTTGCGACAGCGGCTTACGACAAAAACAGTTGAAGCGCG GACCAAGCGAATCTGAAAGA
Product: putative transcriptional regulator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSLRNGSLQHFLEAASVAFGQFARAPEARRSIGQFFAALERPGTARAGEGSRLPVCAHLDMVLAVDTSYASLARLIEGFK GIEPMLEWRRRTKYDHTTASDNFVDGHANAMIVGPGGLEERSDLWFGVTLMAPHVRYPDHDHAPEEVYLVLSKGEFQQGE GNWFSPGIGGSFYNIPGIKHAMRSLETPLFAFWALLAERSH
Sequences:
>Translated_201_residues MSLRNGSLQHFLEAASVAFGQFARAPEARRSIGQFFAALERPGTARAGEGSRLPVCAHLDMVLAVDTSYASLARLIEGFK GIEPMLEWRRRTKYDHTTASDNFVDGHANAMIVGPGGLEERSDLWFGVTLMAPHVRYPDHDHAPEEVYLVLSKGEFQQGE GNWFSPGIGGSFYNIPGIKHAMRSLETPLFAFWALLAERSH >Mature_200_residues SLRNGSLQHFLEAASVAFGQFARAPEARRSIGQFFAALERPGTARAGEGSRLPVCAHLDMVLAVDTSYASLARLIEGFKG IEPMLEWRRRTKYDHTTASDNFVDGHANAMIVGPGGLEERSDLWFGVTLMAPHVRYPDHDHAPEEVYLVLSKGEFQQGEG NWFSPGIGGSFYNIPGIKHAMRSLETPLFAFWALLAERSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22245; Mature: 22114
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRNGSLQHFLEAASVAFGQFARAPEARRSIGQFFAALERPGTARAGEGSRLPVCAHLD CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHCCC MVLAVDTSYASLARLIEGFKGIEPMLEWRRRTKYDHTTASDNFVDGHANAMIVGPGGLEE EEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCC RSDLWFGVTLMAPHVRYPDHDHAPEEVYLVLSKGEFQQGEGNWFSPGIGGSFYNIPGIKH CCCEEEEHEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHH AMRSLETPLFAFWALLAERSH HHHHHCCHHHHHHHHHHHCCC >Mature Secondary Structure SLRNGSLQHFLEAASVAFGQFARAPEARRSIGQFFAALERPGTARAGEGSRLPVCAHLD CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHCCC MVLAVDTSYASLARLIEGFKGIEPMLEWRRRTKYDHTTASDNFVDGHANAMIVGPGGLEE EEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCC RSDLWFGVTLMAPHVRYPDHDHAPEEVYLVLSKGEFQQGEGNWFSPGIGGSFYNIPGIKH CCCEEEEHEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHH AMRSLETPLFAFWALLAERSH HHHHHCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA