BacMap

Definition	Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession	NC_007766
Length	642,517

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The map label for this gene is dppDf

Identifier: 86360972

GI number: 86360972

Start: 257870

End: 258727

Strand: Direct

Name: dppDf

Synonym: RHE_PF00242

Alternate gene names: 86360972

Gene position: 257870-258727 (Clockwise)

Preceding gene: 86360971

Following gene: 86360973

Centisome position: 40.13

GC content: 62.24

Gene sequence:

>858_bases
ATGACAGAGCCCCTGATCGATATCCGCAACCTCGAAATCGCCTACGGCGGCGGCCACATGCGCGCCGTGCGCGGCGTCAG
TTTTGCGCTCGGCCAGGAAAAGCTCGGTATCGTCGGTGAATCCGGGTCGGGCAAATCCACTGTCGGCAGAGCGATCATGA
AACTGCTGCCTCCGACGGCGATGGTTAGCGCCGAGCGCATGGCCTTTCACGACATCGACCTCATCAAAGCGGATGAGCGG
ACGATGATGGCAGTCCGGGGGCGGCGGATCGGACTGATCCTGCAGGACCCGAAATACTCGCTCAACCCCGTCATGCGGAT
CGGCGAACAGATCGCCGAGACCTACCGCTTCCATCATCCCAAGGTCAGCGCGAAAAGGACCTATGGCCAAGCGCTCGACA
TGCTGGAAGCCGTCCAGATCCGCGATCCCGAACGCGTCGCCCGCCTCTATCCGCATGAGATATCCGGCGGGATGGGCCAG
CGCGTGATGATCGCCATGATGCTGATCGCCGAACCCGAGGTGCTGATCGCCGACGAGCCGACCTCAGCGCTCGACGTCAC
CGTGAGGCTTGAGATCCTGGCGCTGCTCGATGAACTCGTTTCCCGCCGCAATCTCGGCCTCATCTTCATCAGCCACGACC
TCAACCTCATCCGCAATTTCTGCGATCGCGTCCTCATCATGTATGCCGGCCGCGTCGTGGAAGTGCTCGAGGCACGCGAT
CTCGACAAGGCCAAACACCCCTATACGCAAGGTCTGCTGGCATCGCTGCCGAGAATCGAGGATCCGCCCGCGCGGCTGCC
GATCCTGAAGCGTGATCCCGCCTGGCTGAATGACCTGACAGCGGAGACGCCGCGATGA

Upstream 100 bases:

>100_bases
GGGTGATCGCCGCGCCCGGCATCGCCATCGCGCTCGTCAGCCTCGCCTTCAATCTCGTCGGCGATGCGCTGCGCGACGTA
CTCGACCCGAGAGGTTCGGA

Downstream 100 bases:

>100_bases
TCCGGATCGACAATCTCACCATCCGCTTCGGACACGGCCAGCGCCCTGTCGTCAGGGACGTGAACCTCGCTATCGACAGC
GGCACGGCCTTCGGGCTCGT

Product: dipeptide ABC transporter, ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTEPLIDIRNLEIAYGGGHMRAVRGVSFALGQEKLGIVGESGSGKSTVGRAIMKLLPPTAMVSAERMAFHDIDLIKADER
TMMAVRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPKVSAKRTYGQALDMLEAVQIRDPERVARLYPHEISGGMGQ
RVMIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVSRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARD
LDKAKHPYTQGLLASLPRIEDPPARLPILKRDPAWLNDLTAETPR

Sequences:

>Translated_285_residues
MTEPLIDIRNLEIAYGGGHMRAVRGVSFALGQEKLGIVGESGSGKSTVGRAIMKLLPPTAMVSAERMAFHDIDLIKADER
TMMAVRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPKVSAKRTYGQALDMLEAVQIRDPERVARLYPHEISGGMGQ
RVMIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVSRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARD
LDKAKHPYTQGLLASLPRIEDPPARLPILKRDPAWLNDLTAETPR
>Mature_284_residues
TEPLIDIRNLEIAYGGGHMRAVRGVSFALGQEKLGIVGESGSGKSTVGRAIMKLLPPTAMVSAERMAFHDIDLIKADERT
MMAVRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHPKVSAKRTYGQALDMLEAVQIRDPERVARLYPHEISGGMGQR
VMIAMMLIAEPEVLIADEPTSALDVTVRLEILALLDELVSRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARDL
DKAKHPYTQGLLASLPRIEDPPARLPILKRDPAWLNDLTAETPR

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=244, Percent_Identity=31.1475409836066, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI9961250, Length=230, Percent_Identity=26.9565217391304, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI48994883, Length=260, Percent_Identity=42.3076923076923, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1787759, Length=285, Percent_Identity=40.7017543859649, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1789963, Length=269, Percent_Identity=42.0074349442379, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI145693107, Length=281, Percent_Identity=41.6370106761566, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1788506, Length=265, Percent_Identity=42.2641509433962, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787548, Length=288, Percent_Identity=34.375, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1787500, Length=245, Percent_Identity=42.8571428571429, Blast_Score=165, Evalue=2e-42,
Organism=Escherichia coli, GI1789962, Length=262, Percent_Identity=38.9312977099237, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1787758, Length=277, Percent_Identity=36.8231046931408, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI48994997, Length=263, Percent_Identity=36.1216730038023, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=34.8739495798319, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787547, Length=266, Percent_Identity=30.8270676691729, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789891, Length=239, Percent_Identity=31.7991631799163, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=33.953488372093, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787712, Length=252, Percent_Identity=30.5555555555556, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=29.8701298701299, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=277, Percent_Identity=27.4368231046931, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=26.7716535433071, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788225, Length=243, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789672, Length=257, Percent_Identity=29.5719844357977, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=28.3185840707965, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081834, Length=239, Percent_Identity=31.7991631799163, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=27.3109243697479, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=29.6137339055794, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=26.890756302521, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789873, Length=238, Percent_Identity=30.2521008403361, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=259, Percent_Identity=27.4131274131274, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786803, Length=234, Percent_Identity=26.4957264957265, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994943, Length=271, Percent_Identity=30.2583025830258, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=28.8793103448276, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=28.7671232876712, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=251, Percent_Identity=29.4820717131474, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=26.8398268398268, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=106, Percent_Identity=37.7358490566038, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=232, Percent_Identity=27.1551724137931, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788644, Length=91, Percent_Identity=37.3626373626374, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787143, Length=253, Percent_Identity=26.8774703557312, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787041, Length=203, Percent_Identity=25.615763546798, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788472, Length=106, Percent_Identity=31.1320754716981, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790525, Length=88, Percent_Identity=36.3636363636364, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789586, Length=250, Percent_Identity=25.2, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788450, Length=222, Percent_Identity=29.2792792792793, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=258, Percent_Identity=28.6821705426357, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=31.5352697095436, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI193202349, Length=242, Percent_Identity=27.6859504132231, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI193211015, Length=276, Percent_Identity=29.3478260869565, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71996809, Length=276, Percent_Identity=29.3478260869565, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=276, Percent_Identity=29.3478260869565, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115534520, Length=232, Percent_Identity=28.8793103448276, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71992285, Length=238, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=230, Percent_Identity=26.5217391304348, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=274, Percent_Identity=25.1824817518248, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=265, Percent_Identity=26.0377358490566, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321752, Length=269, Percent_Identity=26.0223048327138, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641565, Length=208, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI85726357, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221460257, Length=261, Percent_Identity=26.0536398467433, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31846; Mature: 31715

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPLIDIRNLEIAYGGGHMRAVRGVSFALGQEKLGIVGESGSGKSTVGRAIMKLLPPTA
CCCCCEEEECEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCHH
MVSAERMAFHDIDLIKADERTMMAVRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHP
HHHHHHHHHHHHHEEECCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
KVSAKRTYGQALDMLEAVQIRDPERVARLYPHEISGGMGQRVMIAMMLIAEPEVLIADEP
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEECCC
TSALDVTVRLEILALLDELVSRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARD
CCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDKAKHPYTQGLLASLPRIEDPPARLPILKRDPAWLNDLTAETPR
CCHHCCCHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCCCCCC
>Mature Secondary Structure 
TEPLIDIRNLEIAYGGGHMRAVRGVSFALGQEKLGIVGESGSGKSTVGRAIMKLLPPTA
CCCCEEEECEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCHH
MVSAERMAFHDIDLIKADERTMMAVRGRRIGLILQDPKYSLNPVMRIGEQIAETYRFHHP
HHHHHHHHHHHHHEEECCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
KVSAKRTYGQALDMLEAVQIRDPERVARLYPHEISGGMGQRVMIAMMLIAEPEVLIADEP
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCCEEEECCC
TSALDVTVRLEILALLDELVSRRNLGLIFISHDLNLIRNFCDRVLIMYAGRVVEVLEARD
CCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDKAKHPYTQGLLASLPRIEDPPARLPILKRDPAWLNDLTAETPR
CCHHCCCHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]