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The map label for this gene is ybaQ [H]

Identifier: 86360849

GI number: 86360849

Start: 123732

End: 124076

Strand: Direct

Name: ybaQ [H]

Synonym: RHE_PF00116

Alternate gene names: 86360849

Gene position: 123732-124076 (Clockwise)

Preceding gene: 86360848

Following gene: 86360851

Centisome position: 19.26

GC content: 54.49

Gene sequence:

>345_bases
ATGACATCTCAAACCAACATGATCCCGGCTCCCCCGATTTCTCCTGGCGATGTGCTTCGCGACAAGTTTCTGGTCAATCT
AACGCAAGATCAATTGGCGCAGGCGATGCGCGTTTCCCGCTTCTCGGTGAATCAGATCGTAAACGGTCGACGGTCCCTCA
CAGCCGAAATGGCCCTGCGTTTGTCGAAGGTCACGAGTACCACCTGTGACTATTGGCTCAATCTGCAGCGCGCTGTTGAT
GTCTACGAAGCAAGGCTCAAACTCAAGGATGAGCTTTCGGCACTGGAAGTCCTGCGGCCGGAAACGCCGAAAGCAGAGTT
GCTGCACGATTTGCCCGAGGATTGA

Upstream 100 bases:

>100_bases
TGGGTCGAAGGCAAGTGGTATCTGACCTTCGAGTGGATCGAAGGGCAGGGAGCTTTCGAAATACAGCTCGAGCGACGATG
AAACTTCAAAAGGGGGGTCG

Downstream 100 bases:

>100_bases
CCTTGCGGAGGCGCGACGATTCCGGATGACCGGATTCCACCGGCCAAAATATCCGGTCAAGGGGCCGGTCGAACGCAGGC
GTTGCTGAACGTCGGCACCT

Product: putative transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTSQTNMIPAPPISPGDVLRDKFLVNLTQDQLAQAMRVSRFSVNQIVNGRRSLTAEMALRLSKVTSTTCDYWLNLQRAVD
VYEARLKLKDELSALEVLRPETPKAELLHDLPED

Sequences:

>Translated_114_residues
MTSQTNMIPAPPISPGDVLRDKFLVNLTQDQLAQAMRVSRFSVNQIVNGRRSLTAEMALRLSKVTSTTCDYWLNLQRAVD
VYEARLKLKDELSALEVLRPETPKAELLHDLPED
>Mature_113_residues
TSQTNMIPAPPISPGDVLRDKFLVNLTQDQLAQAMRVSRFSVNQIVNGRRSLTAEMALRLSKVTSTTCDYWLNLQRAVDV
YEARLKLKDELSALEVLRPETPKAELLHDLPED

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=91, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12895; Mature: 12764

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQTNMIPAPPISPGDVLRDKFLVNLTQDQLAQAMRVSRFSVNQIVNGRRSLTAEMALR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LSKVTSTTCDYWLNLQRAVDVYEARLKLKDELSALEVLRPETPKAELLHDLPED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
TSQTNMIPAPPISPGDVLRDKFLVNLTQDQLAQAMRVSRFSVNQIVNGRRSLTAEMALR
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LSKVTSTTCDYWLNLQRAVDVYEARLKLKDELSALEVLRPETPKAELLHDLPED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]