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The map label for this gene is rpoE [H]

Identifier: 86360786

GI number: 86360786

Start: 54673

End: 55200

Strand: Direct

Name: rpoE [H]

Synonym: RHE_PF00052

Alternate gene names: 86360786

Gene position: 54673-55200 (Clockwise)

Preceding gene: 86360784

Following gene: 86360787

Centisome position: 8.51

GC content: 59.66

Gene sequence:

>528_bases
ATGGCTTCCTCGTCTTCAGCACGCCCCGCGTCGCATTGTAAAGAAAAATCCGCAATCGAACGGGAGATCGTGGAACTGAC
GCCGGCATTGCGCGCCTTTGCCCGAAGGTTCCTGCGCAGCGATGATGATATCGACGACCTTGTTCAGGAAACCTTGCTGA
AGGCGCTGAACTCGCTTCATCTCTACCAGCCCGGCACCTCCCTCAAATCATGGCTTTTCACCATCCTGCGAAACACATTC
TGCACCAACTATCGCCGGAAGAAGCGCGAGCCGGCGGGAATGGACGCGGCGATGGAACAGGTGGCGATCGCCCCGACGCA
GGAGTGGGTGCTGCGGGAGCACGAGTTGCAGCGAGCCCTCACTCTTCTTTCCGATGACAGGCGCCGGGCTCTTACATTGG
TGGCTGCCGGAACGAGTTATGAGGACGCCGCCAAGATGTGCGGGTGCCGGATCGGCACCTTGAAAAGCCGGGTGAGCCGC
GCCCGCGAGTGCCTTATTGCGATGCTCGGAAACCATCTCGTCGATTGA

Upstream 100 bases:

>100_bases
GCCGGCGAGCATGTGCCGCCCCAGCCCGGGACTTGTGTCCGGTATCGTACGGCAACGATTAGGGAGCCAGCGACTTTCCT
TCTCATCCCAGGAGAGAAAA

Downstream 100 bases:

>100_bases
GCGGCTTGCGCCAGTCCCGCTTCGCCTCGAGCGGCGAGCGGAACAAACGGTCATGGTCTTGGTTCCAATCCCAATCGATG
AGATCGCCGATCGGATCGCT

Product: RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MASSSSARPASHCKEKSAIEREIVELTPALRAFARRFLRSDDDIDDLVQETLLKALNSLHLYQPGTSLKSWLFTILRNTF
CTNYRRKKREPAGMDAAMEQVAIAPTQEWVLREHELQRALTLLSDDRRRALTLVAAGTSYEDAAKMCGCRIGTLKSRVSR
ARECLIAMLGNHLVD

Sequences:

>Translated_175_residues
MASSSSARPASHCKEKSAIEREIVELTPALRAFARRFLRSDDDIDDLVQETLLKALNSLHLYQPGTSLKSWLFTILRNTF
CTNYRRKKREPAGMDAAMEQVAIAPTQEWVLREHELQRALTLLSDDRRRALTLVAAGTSYEDAAKMCGCRIGTLKSRVSR
ARECLIAMLGNHLVD
>Mature_174_residues
ASSSSARPASHCKEKSAIEREIVELTPALRAFARRFLRSDDDIDDLVQETLLKALNSLHLYQPGTSLKSWLFTILRNTFC
TNYRRKKREPAGMDAAMEQVAIAPTQEWVLREHELQRALTLLSDDRRRALTLVAAGTSYEDAAKMCGCRIGTLKSRVSRA
RECLIAMLGNHLVD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19720; Mature: 19589

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSSARPASHCKEKSAIEREIVELTPALRAFARRFLRSDDDIDDLVQETLLKALNSLH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LYQPGTSLKSWLFTILRNTFCTNYRRKKREPAGMDAAMEQVAIAPTQEWVLREHELQRAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
TLLSDDRRRALTLVAAGTSYEDAAKMCGCRIGTLKSRVSRARECLIAMLGNHLVD
HHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASSSSARPASHCKEKSAIEREIVELTPALRAFARRFLRSDDDIDDLVQETLLKALNSLH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LYQPGTSLKSWLFTILRNTFCTNYRRKKREPAGMDAAMEQVAIAPTQEWVLREHELQRAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
TLLSDDRRRALTLVAAGTSYEDAAKMCGCRIGTLKSRVSRARECLIAMLGNHLVD
HHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]