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The map label for this gene is araQ [H]

Identifier: 86360783

GI number: 86360783

Start: 51194

End: 52087

Strand: Direct

Name: araQ [H]

Synonym: RHE_PF00049

Alternate gene names: 86360783

Gene position: 51194-52087 (Clockwise)

Preceding gene: 86360782

Following gene: 86360784

Centisome position: 7.97

GC content: 60.85

Gene sequence:

>894_bases
ATGTCTGATCTCGCTCTCTCGATCCCTGAGGCCCGCACCGCACGACCCCGCTCCGCCGCCAGGGTCCTGCGCACCGTCCA
GACCGTCTGCATCTTCATCATCGCATTGGTGATCGTCTCTCCATTGCTGCTGCTCGTCGTCGCCAGCCTCAAGGACGACC
GGTTCCAGATTCTGGCCGATATGGGCAGTTTCCGCGCCTTCTGGGTTTCGAATCCGACGCTCTCCAACTATGCGGAGGTC
GGCCACCTCTCGGGCCAACTCGCCTTCGGCCGTTACCTCATCAACTCGCTGATCATCCTGGTCACCACCGTCTGCTCCGG
CCTGGTCGTCAACTCGATGGCCGGCTTCGTCCTCGCCTGGGGGTCGCTGAGGGGCCGGGCGGTCATCCTGTCGGTGGTGA
TCGCACTCTATGTGATCCCGCAGGAAAGCATCATCATGCCCCTCGTGATCATGGTATCCAGGGCGGGAATGTCCGATACT
TTCGCGGTGCAGATCGTGCCGTGGGTCGCGAGCCCTCTCTACATCTTCCTGTTCTACCAGTTCTTCACGCAACTGCCGAA
GGAGCTGCTGGAAGCCGCCGAGATGGACGGCGCTTCCTTTTTCCGGGCCTATCGCTCCATTTTCCTGCCGCTCAGCCTGC
CCGCCCTTGCCACCGTATCGATCCTGATGGGCATCGAGACCTGGAACCAGTATCTCTGGCCGATCCTCGTGACGCAGACG
GATTATGCCCGGCCGATCGCCGTCGCCATTGCCACGTTCTTCGGGCAGGACAGCATCTACTGGGATCGCGCAATGGCCGC
CTCCGTTTTGATGATGATCCCGATCCTGGGGCTCTACCTCGTTTTCCAACGCTGGTTCGTGAGTTCCTTTATCGGCTCTG
CCGTGAAAGGTTGA

Upstream 100 bases:

>100_bases
GAGGAGCAGAAGATGGGTTATGCCTCCGCCGTCTCGGTCATCCTGTTCGTCATCGTTCTCGTCATCGCGCTGATCCAGCG
CCAGCTCCTGAGGCGCTTCG

Downstream 100 bases:

>100_bases
AGGATGACAAGCCAAGCGATATTTCCGTCCGGTGAAGGCGGGCGGGCGACGATCAGCGCCGTCCTGCCGGCGGGAACCAC
AATCCATGCCTGGATCAAGG

Product: sucrose ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSDLALSIPEARTARPRSAARVLRTVQTVCIFIIALVIVSPLLLLVVASLKDDRFQILADMGSFRAFWVSNPTLSNYAEV
GHLSGQLAFGRYLINSLIILVTTVCSGLVVNSMAGFVLAWGSLRGRAVILSVVIALYVIPQESIIMPLVIMVSRAGMSDT
FAVQIVPWVASPLYIFLFYQFFTQLPKELLEAAEMDGASFFRAYRSIFLPLSLPALATVSILMGIETWNQYLWPILVTQT
DYARPIAVAIATFFGQDSIYWDRAMAASVLMMIPILGLYLVFQRWFVSSFIGSAVKG

Sequences:

>Translated_297_residues
MSDLALSIPEARTARPRSAARVLRTVQTVCIFIIALVIVSPLLLLVVASLKDDRFQILADMGSFRAFWVSNPTLSNYAEV
GHLSGQLAFGRYLINSLIILVTTVCSGLVVNSMAGFVLAWGSLRGRAVILSVVIALYVIPQESIIMPLVIMVSRAGMSDT
FAVQIVPWVASPLYIFLFYQFFTQLPKELLEAAEMDGASFFRAYRSIFLPLSLPALATVSILMGIETWNQYLWPILVTQT
DYARPIAVAIATFFGQDSIYWDRAMAASVLMMIPILGLYLVFQRWFVSSFIGSAVKG
>Mature_296_residues
SDLALSIPEARTARPRSAARVLRTVQTVCIFIIALVIVSPLLLLVVASLKDDRFQILADMGSFRAFWVSNPTLSNYAEVG
HLSGQLAFGRYLINSLIILVTTVCSGLVVNSMAGFVLAWGSLRGRAVILSVVIALYVIPQESIIMPLVIMVSRAGMSDTF
AVQIVPWVASPLYIFLFYQFFTQLPKELLEAAEMDGASFFRAYRSIFLPLSLPALATVSILMGIETWNQYLWPILVTQTD
YARPIAVAIATFFGQDSIYWDRAMAASVLMMIPILGLYLVFQRWFVSSFIGSAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=209, Percent_Identity=34.9282296650718, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787571, Length=189, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790464, Length=301, Percent_Identity=24.9169435215947, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32824; Mature: 32693

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLALSIPEARTARPRSAARVLRTVQTVCIFIIALVIVSPLLLLVVASLKDDRFQILAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MGSFRAFWVSNPTLSNYAEVGHLSGQLAFGRYLINSLIILVTTVCSGLVVNSMAGFVLAW
HCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLRGRAVILSVVIALYVIPQESIIMPLVIMVSRAGMSDTFAVQIVPWVASPLYIFLFYQ
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHH
FFTQLPKELLEAAEMDGASFFRAYRSIFLPLSLPALATVSILMGIETWNQYLWPILVTQT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
DYARPIAVAIATFFGQDSIYWDRAMAASVLMMIPILGLYLVFQRWFVSSFIGSAVKG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDLALSIPEARTARPRSAARVLRTVQTVCIFIIALVIVSPLLLLVVASLKDDRFQILAD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MGSFRAFWVSNPTLSNYAEVGHLSGQLAFGRYLINSLIILVTTVCSGLVVNSMAGFVLAW
HCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLRGRAVILSVVIALYVIPQESIIMPLVIMVSRAGMSDTFAVQIVPWVASPLYIFLFYQ
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHH
FFTQLPKELLEAAEMDGASFFRAYRSIFLPLSLPALATVSILMGIETWNQYLWPILVTQT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
DYARPIAVAIATFFGQDSIYWDRAMAASVLMMIPILGLYLVFQRWFVSSFIGSAVKG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]