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The map label for this gene is rsbV [H]

Identifier: 85860920

GI number: 85860920

Start: 3092120

End: 3092464

Strand: Direct

Name: rsbV [H]

Synonym: SYN_00229

Alternate gene names: 85860920

Gene position: 3092120-3092464 (Clockwise)

Preceding gene: 85860919

Following gene: 85860921

Centisome position: 97.26

GC content: 48.12

Gene sequence:

>345_bases
ATGCAATTACACCAGACAAAAAATGGGGATGTCCTGATCGTAAAACCTTTGGAAAAAAGGATCGACGCCGCTACCGCAAC
GGAATTTAAAGAAAAGATGAGCAACTGGATCGGCGCCGGAAACAAGCGGATCGTGCTCAATCTCACGGAAGTTGATTTTA
TCGACAGCAGCGGCCTTGGCGCTATTGTTTCAAGCCTCAAAAAGATTGGAACGGAAGGTGATCTTGTGATCTGCGCCGTT
AAGGAGACGGTCATGAGTCTGTTCCGCCTGACCCGCATGAATCGGGTATTCGATATTTTTCCGTCAGAAGATGAGGCCGT
CAGATCTCTTTCCGGAAAGGCTTGA

Upstream 100 bases:

>100_bases
CAATTCAGAATTATGTCAAGGGAGCAAACCTTCAGGATGATGTAAGTCTCCTGGGCATTGAATTCAAGAAGAGGAAAATA
AACACCTGAGGTGGTAAATC

Downstream 100 bases:

>100_bases
AAAATGGAACCGGCGGGCAGCAATATCAAGTTGATGATTGAAAGCAGAATAGAGAATGTTTCTCTCGTTGGAGAGGCCGT
GCGAGGCATCGCCAATGCGT

Product: anti-sigma B factor antagonist

Products: NA

Alternate protein names: Anti-anti-sigma-B factor [H]

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MQLHQTKNGDVLIVKPLEKRIDAATATEFKEKMSNWIGAGNKRIVLNLTEVDFIDSSGLGAIVSSLKKIGTEGDLVICAV
KETVMSLFRLTRMNRVFDIFPSEDEAVRSLSGKA

Sequences:

>Translated_114_residues
MQLHQTKNGDVLIVKPLEKRIDAATATEFKEKMSNWIGAGNKRIVLNLTEVDFIDSSGLGAIVSSLKKIGTEGDLVICAV
KETVMSLFRLTRMNRVFDIFPSEDEAVRSLSGKA
>Mature_114_residues
MQLHQTKNGDVLIVKPLEKRIDAATATEFKEKMSNWIGAGNKRIVLNLTEVDFIDSSGLGAIVSSLKKIGTEGDLVICAV
KETVMSLFRLTRMNRVFDIFPSEDEAVRSLSGKA

Specific function: Positive regulator of sigma-B activity. Non- phosphorylated rsbV binds to rsbW, preventing its association with sigma-B. When phosphorylated, releases rsbW, which is then free to complex with and inactivate sigma-B [H]

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003658
- InterPro:   IPR002645 [H]

Pfam domain/function: PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 12555; Mature: 12555

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLHQTKNGDVLIVKPLEKRIDAATATEFKEKMSNWIGAGNKRIVLNLTEVDFIDSSGLG
CCCCCCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCHH
AIVSSLKKIGTEGDLVICAVKETVMSLFRLTRMNRVFDIFPSEDEAVRSLSGKA
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCC
>Mature Secondary Structure
MQLHQTKNGDVLIVKPLEKRIDAATATEFKEKMSNWIGAGNKRIVLNLTEVDFIDSSGLG
CCCCCCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCHH
AIVSSLKKIGTEGDLVICAVKETVMSLFRLTRMNRVFDIFPSEDEAVRSLSGKA
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]