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The map label for this gene is rnfA [H]

Identifier: 85860866

GI number: 85860866

Start: 3027535

End: 3028506

Strand: Direct

Name: rnfA [H]

Synonym: SYN_01659

Alternate gene names: 85860866

Gene position: 3027535-3028506 (Clockwise)

Preceding gene: 85860865

Following gene: 85860867

Centisome position: 95.23

GC content: 47.33

Gene sequence:

>972_bases
ATGAGCACTTTGATGAAAAGATCCATTTTGCTGTCGATCTGGCTGGTTTCGATCTTTCTTGCCAGTCTGCCGGTGTGCGG
TCATGCTGCCGAAAATTCATTTGCCAAAAAGACTGATTTCAAGGACAACCGGACCATCGTGATCGAGTTTGCGGGAGCTG
TCGACGAAGAATGGGCAACCAGTCCAGCCAACTTTAAAGTAAATGAAAAACAGAACCCGGATGTTCTCCTGCCCGTTGAA
AAGGTAGAGCTCAGTCCCGACAAGAAAACCGTTTTGATCAGGTTTGGTGAAGATATAGACCTCCGCGCGGCCCATGTTGT
CAGCATGACCCCAGTATCGTCTGAGGGCAAGAATATGGGACCCGCCATTTTGGACGTAAAGAAATCTTATTTCGGTTATC
TTTTCTCGATTCTCATCGGCGCGATGCTGATAAACAACTATGTCTTCACCAAATATCTTGGCCTGTGCGTTTTTATCGGA
ACATCCCGGAAAAAGGACACTGCTGTCGGTATGGGGATAACGTTCACAATCGTCATGGTGGTCAGTGCCATGATATCCTG
GTTCCTGTATCAGTACGTTCTCAAACCCTATCGGCTCGATTACCTTCAGGTCGTAGTTTTCATTGGGTTGGTTTCCCTTA
CTGTACAGGCTGTTGACACGGTCCTTCGTAAGGTTAATCCTGCTCTTTTCAAGGCCTTCGGTGTGTACCTTGTTCTGGTG
ATCGCCAACTGTGTTATCATTGCTGTTCCTTTGACTCTTGCGAGCAATGAATACAACGCATTTGAAAGCTTCATGCTGGC
TCTTGGCGCTGGCGGTGGATTCCTTCTCGCACTCTTCCTGATGTCGGCATCAAGGGAGCGTTTGGAATTAGCCAATGTTC
CTCCCACATTTCGTGGTTTGCCCATAGCTTTTGTCGCAACAGGCCTTTTTGCTCTTGCCTTCATGGGTTTTTCCGGAATG
GCAATTTTTTAA

Upstream 100 bases:

>100_bases
TCTTTGTTCTCCCTGCTGCAGGTTTCTTCTGTGTGGGGATCATGATGGCAATGTTCAACTACATTGAGGTGGTTTTCAAC
CGCAGTAAAGAGAGGAAGTC

Downstream 100 bases:

>100_bases
TTAAATTTAACTTTTTTGAGGTATGTCATGGATCCAGTATTGATTAAGTTGGCTCTGGGGGGAATTGCTTTCCTCGTATG
TATCGGACTCTTGTTCGGTA

Product: sodium-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSTLMKRSILLSIWLVSIFLASLPVCGHAAENSFAKKTDFKDNRTIVIEFAGAVDEEWATSPANFKVNEKQNPDVLLPVE
KVELSPDKKTVLIRFGEDIDLRAAHVVSMTPVSSEGKNMGPAILDVKKSYFGYLFSILIGAMLINNYVFTKYLGLCVFIG
TSRKKDTAVGMGITFTIVMVVSAMISWFLYQYVLKPYRLDYLQVVVFIGLVSLTVQAVDTVLRKVNPALFKAFGVYLVLV
IANCVIIAVPLTLASNEYNAFESFMLALGAGGGFLLALFLMSASRERLELANVPPTFRGLPIAFVATGLFALAFMGFSGM
AIF

Sequences:

>Translated_323_residues
MSTLMKRSILLSIWLVSIFLASLPVCGHAAENSFAKKTDFKDNRTIVIEFAGAVDEEWATSPANFKVNEKQNPDVLLPVE
KVELSPDKKTVLIRFGEDIDLRAAHVVSMTPVSSEGKNMGPAILDVKKSYFGYLFSILIGAMLINNYVFTKYLGLCVFIG
TSRKKDTAVGMGITFTIVMVVSAMISWFLYQYVLKPYRLDYLQVVVFIGLVSLTVQAVDTVLRKVNPALFKAFGVYLVLV
IANCVIIAVPLTLASNEYNAFESFMLALGAGGGFLLALFLMSASRERLELANVPPTFRGLPIAFVATGLFALAFMGFSGM
AIF
>Mature_322_residues
STLMKRSILLSIWLVSIFLASLPVCGHAAENSFAKKTDFKDNRTIVIEFAGAVDEEWATSPANFKVNEKQNPDVLLPVEK
VELSPDKKTVLIRFGEDIDLRAAHVVSMTPVSSEGKNMGPAILDVKKSYFGYLFSILIGAMLINNYVFTKYLGLCVFIGT
SRKKDTAVGMGITFTIVMVVSAMISWFLYQYVLKPYRLDYLQVVVFIGLVSLTVQAVDTVLRKVNPALFKAFGVYLVLVI
ANCVIIAVPLTLASNEYNAFESFMLALGAGGGFLLALFLMSASRERLELANVPPTFRGLPIAFVATGLFALAFMGFSGMA
IF

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=184, Percent_Identity=40.2173913043478, Blast_Score=151, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 35425; Mature: 35294

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLMKRSILLSIWLVSIFLASLPVCGHAAENSFAKKTDFKDNRTIVIEFAGAVDEEWAT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCHHHCC
SPANFKVNEKQNPDVLLPVEKVELSPDKKTVLIRFGEDIDLRAAHVVSMTPVSSEGKNMG
CCCCEEECCCCCCCEEEEHHHEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
PAILDVKKSYFGYLFSILIGAMLINNYVFTKYLGLCVFIGTSRKKDTAVGMGITFTIVMV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCHHHHHHHHH
VSAMISWFLYQYVLKPYRLDYLQVVVFIGLVSLTVQAVDTVLRKVNPALFKAFGVYLVLV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
IANCVIIAVPLTLASNEYNAFESFMLALGAGGGFLLALFLMSASRERLELANVPPTFRGL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
PIAFVATGLFALAFMGFSGMAIF
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STLMKRSILLSIWLVSIFLASLPVCGHAAENSFAKKTDFKDNRTIVIEFAGAVDEEWAT
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCHHHCC
SPANFKVNEKQNPDVLLPVEKVELSPDKKTVLIRFGEDIDLRAAHVVSMTPVSSEGKNMG
CCCCEEECCCCCCCEEEEHHHEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
PAILDVKKSYFGYLFSILIGAMLINNYVFTKYLGLCVFIGTSRKKDTAVGMGITFTIVMV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHCCHHHHHHHHH
VSAMISWFLYQYVLKPYRLDYLQVVVFIGLVSLTVQAVDTVLRKVNPALFKAFGVYLVLV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
IANCVIIAVPLTLASNEYNAFESFMLALGAGGGFLLALFLMSASRERLELANVPPTFRGL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
PIAFVATGLFALAFMGFSGMAIF
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA