| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85860802
Identifier: 85860802
GI number: 85860802
Start: 2969430
End: 2969984
Strand: Direct
Name: 85860802
Synonym: SYN_00315
Alternate gene names: NA
Gene position: 2969430-2969984 (Clockwise)
Preceding gene: 85860798
Following gene: 85860803
Centisome position: 93.4
GC content: 55.32
Gene sequence:
>555_bases ATGGATCGTTCATCTGCTGTCGAACTGCTTCATTCATACATTCAAAATGAAAGGATGCTTCAGCATTCCTACGCGGCGGA AGCCGTCATGCGGGCGCTGGCCAGGCGGCTGGGGCGGGACGAAGATCAATGGGGGCTGGCCGGCCTGCTTCATGACCTGG ATGTGGAAAAGGTTCAGGCCGACCTGACCGTCCATGGTCTGGAAGCCGCGAAAATCCTTGAGGAGAAGGGTGTGGACCCG GAGATCATCGAGGCGATTGTCATGCACAACGAAATGGCGAGCGGCAAGCCTCGACAGCAGGAATTCCATTTCGCCCTGGC CGCAGGCGAAACATTGACCGGACTGATCATGGCGACCGCTCTTGTCTATCCGGATCGGAAACTGGCCAGCGTCAAACCCA AGTCCGTCGTCAAACGCATGAAAGAGAAAAATTTTGCAGCCTCGGTCAGTCGGGACTGTATCCTGGAATGTGAAAAGCTG GGGATTCCCCTTTCGGAATTCGTTGATCTTTCTTTAAAGGCCATGCAGGAGATCAGCGGGCACCTGGGGTTGTGA
Upstream 100 bases:
>100_bases CGCATTGGCACAGCTTTCTGATCCTCTTGACAACACGCCCCGGAATTGTAATTCTGTGTAAAAATTCCCCATGGCACAGT AAAGGAGGAATCAAGGTCTC
Downstream 100 bases:
>100_bases TTCCCGGAAATCTATAATCTATATCTCGGAGGTGACGGTCATGTTCAAGCATATTCTTGTCCCTGTCGACTTTTCACCTA AAAACAGGCACGCACTGGAC
Product: hydrolase
Products: NA
Alternate protein names: Metal Dependent Phophohydrolase; HDIG Domain-Containing Protein; Hydrolase; HDIG Domain Protein; Hdig Domain Protein; HD Superfamily Hydrolase; HDIG-Domain-Containing Protein; Hydrolase Family Protein; Domain HDIG Protein; Phosphohydrolase; HAD-Superfamily Hydrolase; Metal-Dependent Phosphoesterase; HD Domain Protein; Lysyl-TRNA Synthetase
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MDRSSAVELLHSYIQNERMLQHSYAAEAVMRALARRLGRDEDQWGLAGLLHDLDVEKVQADLTVHGLEAAKILEEKGVDP EIIEAIVMHNEMASGKPRQQEFHFALAAGETLTGLIMATALVYPDRKLASVKPKSVVKRMKEKNFAASVSRDCILECEKL GIPLSEFVDLSLKAMQEISGHLGL
Sequences:
>Translated_184_residues MDRSSAVELLHSYIQNERMLQHSYAAEAVMRALARRLGRDEDQWGLAGLLHDLDVEKVQADLTVHGLEAAKILEEKGVDP EIIEAIVMHNEMASGKPRQQEFHFALAAGETLTGLIMATALVYPDRKLASVKPKSVVKRMKEKNFAASVSRDCILECEKL GIPLSEFVDLSLKAMQEISGHLGL >Mature_184_residues MDRSSAVELLHSYIQNERMLQHSYAAEAVMRALARRLGRDEDQWGLAGLLHDLDVEKVQADLTVHGLEAAKILEEKGVDP EIIEAIVMHNEMASGKPRQQEFHFALAAGETLTGLIMATALVYPDRKLASVKPKSVVKRMKEKNFAASVSRDCILECEKL GIPLSEFVDLSLKAMQEISGHLGL
Specific function: Unknown
COG id: COG2316
COG function: function code R; Predicted hydrolase (HD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20391; Mature: 20391
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRSSAVELLHSYIQNERMLQHSYAAEAVMRALARRLGRDEDQWGLAGLLHDLDVEKVQA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH DLTVHGLEAAKILEEKGVDPEIIEAIVMHNEMASGKPRQQEFHFALAAGETLTGLIMATA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHH LVYPDRKLASVKPKSVVKRMKEKNFAASVSRDCILECEKLGIPLSEFVDLSLKAMQEISG HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HLGL CCCC >Mature Secondary Structure MDRSSAVELLHSYIQNERMLQHSYAAEAVMRALARRLGRDEDQWGLAGLLHDLDVEKVQA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH DLTVHGLEAAKILEEKGVDPEIIEAIVMHNEMASGKPRQQEFHFALAAGETLTGLIMATA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHH LVYPDRKLASVKPKSVVKRMKEKNFAASVSRDCILECEKLGIPLSEFVDLSLKAMQEISG HHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH HLGL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA