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The map label for this gene is rnz [H]

Identifier: 85860535

GI number: 85860535

Start: 2715428

End: 2716471

Strand: Direct

Name: rnz [H]

Synonym: SYN_01804

Alternate gene names: 85860535

Gene position: 2715428-2716471 (Clockwise)

Preceding gene: 85860534

Following gene: 85860536

Centisome position: 85.41

GC content: 53.35

Gene sequence:

>1044_bases
GTGTATTCCGCCCTGCTGATCAATGAACCTTTCGGCGACCCCGCCGTATTAATCAAAAGCAAATACCGTCACGAGTCCGT
TCTTTTCGATCTCGGCGATCTTCATAAACTCGCACCGCGGGAAATTCTCAAAATCGGGCATATTTTCGTCTCTCACACCC
ATGTGGACCATTTCATCGGCTTCGATACAATCCTGAGAATCTGCCTGGGAAGAAACCGTCGAATCCGCCTCTTCGGGCCA
CCCGGCTTCCTGTTCCAGGTCGAAAGCAAGCTCCACAGCTATACATGGAACCTCGTGGAAAATTATTCCAACGATTTCGA
GCTGCTGGTTACGGAAATTCACCCATCCCACCGGATGTCCAGGCTCTATCGCTGCCGCGCCGCGTTTCGGGGGGAGCCGG
TCACCGAAGAAAAAATTTCATCGAACCAACCCCTTGTGGAAGAGACCTTTTTTTCCATCCGCTGCATCTTTCTTGACCAT
CTTATCCCGTATCTGGCCTTTCGTTTTGAAGAAAGAAGCCGCATCAACATCATGAAGAACGCATTGGAAACCCTCGGCCT
ACCCACCGGGCGCTGGTTGATGGATCTCAAGGAAGCTATCCTGCAGGGCCGACCCGAATCCTGCCCCATCCGGATCAGCG
ATAAATCCAGCGGCGACAGGCCTGCCAACCGAGTGCTTCCCCTGGGTTTTTTAAAGGAAAAAGTGGTCAGGATCACCCGG
GGACAGCGGATCTGCTATGTAACAGACGCGATTTACAGTCCTGAAAACATAAAGCGGATTCTCCTCATTGCGGATTCCGC
CGATCACCTTTTAATTGAAGCAACCTTCCTCCATGAAGACCATGAAAAGGCCGCCGCGAAGTATCATCTGACCGCCAGGC
AGGCGGGTCTTCTGGCCCGGCAGGCATCGGTGAAGCGTTTTTCGCTCTTTCACTTTTCTCCCAAGTACAAGGGTGCAGCC
GCCGCCCTCCAGCATGAGGCCAAGGAAGCTTTTGAGCGCCCGCTTTCCGATCCACTGTCGCCCTTCGATGCTGCAACCCG
ATGA

Upstream 100 bases:

>100_bases
AGAGCATATGCCGTGAAACCAATGCGAAACCGATGAAAGTTCAGCTGAACAAAGGTAATTGGGCATAATGCCCGAAACTC
GATTTTGAAAGCCTGCAGAT

Downstream 100 bases:

>100_bases
ACCCCCAACAGGCGACCTGACCCCAAGTCCGAATCCGGAGCGGCTGTCCAGGCGGCAAGGCAAACGGACGTTGAGAGGCA
GATAGCGGATAGCACCGTGA

Product: ribonuclease Z

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MYSALLINEPFGDPAVLIKSKYRHESVLFDLGDLHKLAPREILKIGHIFVSHTHVDHFIGFDTILRICLGRNRRIRLFGP
PGFLFQVESKLHSYTWNLVENYSNDFELLVTEIHPSHRMSRLYRCRAAFRGEPVTEEKISSNQPLVEETFFSIRCIFLDH
LIPYLAFRFEERSRINIMKNALETLGLPTGRWLMDLKEAILQGRPESCPIRISDKSSGDRPANRVLPLGFLKEKVVRITR
GQRICYVTDAIYSPENIKRILLIADSADHLLIEATFLHEDHEKAAAKYHLTARQAGLLARQASVKRFSLFHFSPKYKGAA
AALQHEAKEAFERPLSDPLSPFDAATR

Sequences:

>Translated_347_residues
MYSALLINEPFGDPAVLIKSKYRHESVLFDLGDLHKLAPREILKIGHIFVSHTHVDHFIGFDTILRICLGRNRRIRLFGP
PGFLFQVESKLHSYTWNLVENYSNDFELLVTEIHPSHRMSRLYRCRAAFRGEPVTEEKISSNQPLVEETFFSIRCIFLDH
LIPYLAFRFEERSRINIMKNALETLGLPTGRWLMDLKEAILQGRPESCPIRISDKSSGDRPANRVLPLGFLKEKVVRITR
GQRICYVTDAIYSPENIKRILLIADSADHLLIEATFLHEDHEKAAAKYHLTARQAGLLARQASVKRFSLFHFSPKYKGAA
AALQHEAKEAFERPLSDPLSPFDAATR
>Mature_347_residues
MYSALLINEPFGDPAVLIKSKYRHESVLFDLGDLHKLAPREILKIGHIFVSHTHVDHFIGFDTILRICLGRNRRIRLFGP
PGFLFQVESKLHSYTWNLVENYSNDFELLVTEIHPSHRMSRLYRCRAAFRGEPVTEEKISSNQPLVEETFFSIRCIFLDH
LIPYLAFRFEERSRINIMKNALETLGLPTGRWLMDLKEAILQGRPESCPIRISDKSSGDRPANRVLPLGFLKEKVVRITR
GQRICYVTDAIYSPENIKRILLIADSADHLLIEATFLHEDHEKAAAKYHLTARQAGLLARQASVKRFSLFHFSPKYKGAA
AALQHEAKEAFERPLSDPLSPFDAATR

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 39831; Mature: 39831

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSALLINEPFGDPAVLIKSKYRHESVLFDLGDLHKLAPREILKIGHIFVSHTHVDHFIG
CCCEEEEECCCCCCEEEEEHHCCCHHHEECCHHHHHHCHHHHHHHHHHHEECCHHHHHHC
FDTILRICLGRNRRIRLFGPPGFLFQVESKLHSYTWNLVENYSNDFELLVTEIHPSHRMS
HHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH
RLYRCRAAFRGEPVTEEKISSNQPLVEETFFSIRCIFLDHLIPYLAFRFEERSRINIMKN
HHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ALETLGLPTGRWLMDLKEAILQGRPESCPIRISDKSSGDRPANRVLPLGFLKEKVVRITR
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHCCCHHHHHHHHHHHHC
GQRICYVTDAIYSPENIKRILLIADSADHLLIEATFLHEDHEKAAAKYHLTARQAGLLAR
CCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEHHCHHHHHHHHHHHHHHHHHHHHH
QASVKRFSLFHFSPKYKGAAAALQHEAKEAFERPLSDPLSPFDAATR
HHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYSALLINEPFGDPAVLIKSKYRHESVLFDLGDLHKLAPREILKIGHIFVSHTHVDHFIG
CCCEEEEECCCCCCEEEEEHHCCCHHHEECCHHHHHHCHHHHHHHHHHHEECCHHHHHHC
FDTILRICLGRNRRIRLFGPPGFLFQVESKLHSYTWNLVENYSNDFELLVTEIHPSHRMS
HHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH
RLYRCRAAFRGEPVTEEKISSNQPLVEETFFSIRCIFLDHLIPYLAFRFEERSRINIMKN
HHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ALETLGLPTGRWLMDLKEAILQGRPESCPIRISDKSSGDRPANRVLPLGFLKEKVVRITR
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHCCCHHHHHHHHHHHHC
GQRICYVTDAIYSPENIKRILLIADSADHLLIEATFLHEDHEKAAAKYHLTARQAGLLAR
CCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEHHCHHHHHHHHHHHHHHHHHHHHH
QASVKRFSLFHFSPKYKGAAAALQHEAKEAFERPLSDPLSPFDAATR
HHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]