| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is hflX [H]
Identifier: 85860494
GI number: 85860494
Start: 2675184
End: 2676851
Strand: Direct
Name: hflX [H]
Synonym: SYN_01762
Alternate gene names: 85860494
Gene position: 2675184-2676851 (Clockwise)
Preceding gene: 85860493
Following gene: 85860497
Centisome position: 84.14
GC content: 61.27
Gene sequence:
>1668_bases GTGCGTCTTTTCCAGAAGGAGCTATCGACCATCCAGAAAATATACGGAAATCTAACCGGCTTGAAGCCGATCCAGATCAA ACGCCTGGAGCAGTTCTACCGGAGGCGGGTGCCGCCCGATGCAATCGTCACCCAGGAAATGGCCCGTCAGCTCACGGAAC TCTCCCGGGAGCTCAACCGGCAGCTGGGGGTATTGCTCAGCCGGCGGGGCGAAGTGGCCTGTGTGATCGTCGGCACCCAT AAGGGCATCCTCATCCCCAGCCTGGAGGGATTCCGTTCCTCATCGGCCCGTTTCAAGGGGCTCCGCCTGATTCATACCCA CTTGGGTCCCGACCCCCTGAATGCCGAAGACCTCAGCGACCTGGCGCTTCTGCGCCTCGATCTCATCTGCGCCGTGGAAA CGGGCCCCGACGGTCTCCCCGGCATCGTCCACACTGCCCATCTGATTCCCGAAAATCCCGACGGCGGCTACTGGCGGGTT GAACCGCCCCAACGAATCTCCGATCTGAAGGCGGATTTCCTTTCCTTCATCGGCGCCCTGGAAAACGAGTTCGCCCGAAC CCAGCGTTCCCGCAAGGTGGATTCCGCCGACCGGGCGATTCTTCTTCGCGTCGAAACGAATCCCCTCTTCGACAGCGAGG GGTCCCTGGAGGAGCTCAGGGAACTGGCCCACTCCTGCAACGTGGAGGTATTTGACCGGATCATCCAGCACCGCCCCCAG CTTGACCCGAGGTATCTCCTCGGCAAGGGAAAGCTCGCCGACGTGATCATCAAGGCCCTGCAGATCGGCGCCAACCTGCT CATCTTCGATCACGAGCTGACGCCCGCCCAGGTTCGTTCCATTGCGGATTTCACGGAGATGAAGGTCATCGACCGGACGC AGGTCATCCTGGACATCTTCGCGCAGCGCGCCCACAGCCGGGAAGGAAAGATTCAGGTGGAGCTCGCCCAGTTGAAATAT CTTCTGCCCCGCCTGGCGACGCGCCATACGGGCATGTCCCGCCTCACGGGGGGAATCGGCGGACGGGGACCGGGGGAAAC GAAGCTGGAAGTCAATCGGCGGCGGGTGAGGGACCGGATTCTGCATCTGGAGGAAGACATCCGGAATATTGAAAAGGCCC GGGGGCAGCGGCGGCTGAAACGGGAACGGACGGGTCTGCCGGTGATCTCGATTGTAGGCTACACCAACGCCGGAAAATCC ACCCTGCTCAACACCCTCACGAAAAGCCGCGTCTTCACGGAAGACCGTCTCTTCGCCACCCTGGACCCGAAAAGTTCACG GCTGCGCTTTCCCCGGGATGCGGAAGCCGTCATTACCGATACGGTGGGCTTCATCCGCGACCTCCCGGCGGATCTCTTCG CCGCCTTCAAGGCCACGCTGGAGGAACTCTATGAAGCGGACATCCTCCTCCACGTCATCGATGTAAGCAACCCCGGCTTC GAAAGCCACATCGCCGCCGTGGAAAAAATCCTGGAAGAGATCGGCATACAGGGAAAAGCCACCCTCCGGGTCTTCAACAA GGCCGACCGCTTTGCCGACAAGGCCCTGCTGTCGACCCTCTGCCGGCGCTTCAACGCCATCGCCGTATCGGCCCTTCAAC CGGATAGTCTGGGGCCGCTCATGGAGCAACTGGAAGAGATCGTTTCCCCCCCAGATGAAACCCGATGA
Upstream 100 bases:
>100_bases TTTTTTCATCTCCTTCCTTGACCGGATGAGACACATCTGATAATTTTTCCCGTCAGCAGGAATAAAATCATTTCCGCAAC CGATCCGGGCGCTCATTTCA
Downstream 100 bases:
>100_bases GATCGGCATAACGTCGGGACGCCCCGGCATTGGCGGTGACGGCAAGACGGCCCTGTTCGCCCCGGCGTCTCAACTCATCG GGATCCGCCAGGAGCGACAG
Product: GTPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MRLFQKELSTIQKIYGNLTGLKPIQIKRLEQFYRRRVPPDAIVTQEMARQLTELSRELNRQLGVLLSRRGEVACVIVGTH KGILIPSLEGFRSSSARFKGLRLIHTHLGPDPLNAEDLSDLALLRLDLICAVETGPDGLPGIVHTAHLIPENPDGGYWRV EPPQRISDLKADFLSFIGALENEFARTQRSRKVDSADRAILLRVETNPLFDSEGSLEELRELAHSCNVEVFDRIIQHRPQ LDPRYLLGKGKLADVIIKALQIGANLLIFDHELTPAQVRSIADFTEMKVIDRTQVILDIFAQRAHSREGKIQVELAQLKY LLPRLATRHTGMSRLTGGIGGRGPGETKLEVNRRRVRDRILHLEEDIRNIEKARGQRRLKRERTGLPVISIVGYTNAGKS TLLNTLTKSRVFTEDRLFATLDPKSSRLRFPRDAEAVITDTVGFIRDLPADLFAAFKATLEELYEADILLHVIDVSNPGF ESHIAAVEKILEEIGIQGKATLRVFNKADRFADKALLSTLCRRFNAIAVSALQPDSLGPLMEQLEEIVSPPDETR
Sequences:
>Translated_555_residues MRLFQKELSTIQKIYGNLTGLKPIQIKRLEQFYRRRVPPDAIVTQEMARQLTELSRELNRQLGVLLSRRGEVACVIVGTH KGILIPSLEGFRSSSARFKGLRLIHTHLGPDPLNAEDLSDLALLRLDLICAVETGPDGLPGIVHTAHLIPENPDGGYWRV EPPQRISDLKADFLSFIGALENEFARTQRSRKVDSADRAILLRVETNPLFDSEGSLEELRELAHSCNVEVFDRIIQHRPQ LDPRYLLGKGKLADVIIKALQIGANLLIFDHELTPAQVRSIADFTEMKVIDRTQVILDIFAQRAHSREGKIQVELAQLKY LLPRLATRHTGMSRLTGGIGGRGPGETKLEVNRRRVRDRILHLEEDIRNIEKARGQRRLKRERTGLPVISIVGYTNAGKS TLLNTLTKSRVFTEDRLFATLDPKSSRLRFPRDAEAVITDTVGFIRDLPADLFAAFKATLEELYEADILLHVIDVSNPGF ESHIAAVEKILEEIGIQGKATLRVFNKADRFADKALLSTLCRRFNAIAVSALQPDSLGPLMEQLEEIVSPPDETR >Mature_555_residues MRLFQKELSTIQKIYGNLTGLKPIQIKRLEQFYRRRVPPDAIVTQEMARQLTELSRELNRQLGVLLSRRGEVACVIVGTH KGILIPSLEGFRSSSARFKGLRLIHTHLGPDPLNAEDLSDLALLRLDLICAVETGPDGLPGIVHTAHLIPENPDGGYWRV EPPQRISDLKADFLSFIGALENEFARTQRSRKVDSADRAILLRVETNPLFDSEGSLEELRELAHSCNVEVFDRIIQHRPQ LDPRYLLGKGKLADVIIKALQIGANLLIFDHELTPAQVRSIADFTEMKVIDRTQVILDIFAQRAHSREGKIQVELAQLKY LLPRLATRHTGMSRLTGGIGGRGPGETKLEVNRRRVRDRILHLEEDIRNIEKARGQRRLKRERTGLPVISIVGYTNAGKS TLLNTLTKSRVFTEDRLFATLDPKSSRLRFPRDAEAVITDTVGFIRDLPADLFAAFKATLEELYEADILLHVIDVSNPGF ESHIAAVEKILEEIGIQGKATLRVFNKADRFADKALLSTLCRRFNAIAVSALQPDSLGPLMEQLEEIVSPPDETR
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=236, Percent_Identity=33.0508474576271, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI310133116, Length=226, Percent_Identity=33.6283185840708, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI310124269, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI310124267, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI310124171, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI310124169, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=4e-22, Organism=Escherichia coli, GI1790615, Length=322, Percent_Identity=46.2732919254658, Blast_Score=276, Evalue=2e-75, Organism=Caenorhabditis elegans, GI17561038, Length=299, Percent_Identity=27.7591973244147, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI24650079, Length=351, Percent_Identity=30.4843304843305, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 62387; Mature: 62387
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLFQKELSTIQKIYGNLTGLKPIQIKRLEQFYRRRVPPDAIVTQEMARQLTELSRELNR CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH QLGVLLSRRGEVACVIVGTHKGILIPSLEGFRSSSARFKGLRLIHTHLGPDPLNAEDLSD HHHHHHHCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHHHH LALLRLDLICAVETGPDGLPGIVHTAHLIPENPDGGYWRVEPPQRISDLKADFLSFIGAL HHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH ENEFARTQRSRKVDSADRAILLRVETNPLFDSEGSLEELRELAHSCNVEVFDRIIQHRPQ HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCC LDPRYLLGKGKLADVIIKALQIGANLLIFDHELTPAQVRSIADFTEMKVIDRTQVILDIF CCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQRAHSREGKIQVELAQLKYLLPRLATRHTGMSRLTGGIGGRGPGETKLEVNRRRVRDRI HHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LHLEEDIRNIEKARGQRRLKRERTGLPVISIVGYTNAGKSTLLNTLTKSRVFTEDRLFAT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE LDPKSSRLRFPRDAEAVITDTVGFIRDLPADLFAAFKATLEELYEADILLHVIDVSNPGF ECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH ESHIAAVEKILEEIGIQGKATLRVFNKADRFADKALLSTLCRRFNAIAVSALQPDSLGPL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHH MEQLEEIVSPPDETR HHHHHHHHCCCCCCC >Mature Secondary Structure MRLFQKELSTIQKIYGNLTGLKPIQIKRLEQFYRRRVPPDAIVTQEMARQLTELSRELNR CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH QLGVLLSRRGEVACVIVGTHKGILIPSLEGFRSSSARFKGLRLIHTHLGPDPLNAEDLSD HHHHHHHCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHHHH LALLRLDLICAVETGPDGLPGIVHTAHLIPENPDGGYWRVEPPQRISDLKADFLSFIGAL HHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH ENEFARTQRSRKVDSADRAILLRVETNPLFDSEGSLEELRELAHSCNVEVFDRIIQHRPQ HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCC LDPRYLLGKGKLADVIIKALQIGANLLIFDHELTPAQVRSIADFTEMKVIDRTQVILDIF CCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQRAHSREGKIQVELAQLKYLLPRLATRHTGMSRLTGGIGGRGPGETKLEVNRRRVRDRI HHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LHLEEDIRNIEKARGQRRLKRERTGLPVISIVGYTNAGKSTLLNTLTKSRVFTEDRLFAT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE LDPKSSRLRFPRDAEAVITDTVGFIRDLPADLFAAFKATLEELYEADILLHVIDVSNPGF ECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH ESHIAAVEKILEEIGIQGKATLRVFNKADRFADKALLSTLCRRFNAIAVSALQPDSLGPL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHH MEQLEEIVSPPDETR HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]