| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85860399
Identifier: 85860399
GI number: 85860399
Start: 2568652
End: 2569392
Strand: Direct
Name: 85860399
Synonym: SYN_01162
Alternate gene names: NA
Gene position: 2568652-2569392 (Clockwise)
Preceding gene: 85860398
Following gene: 85860400
Centisome position: 80.79
GC content: 55.6
Gene sequence:
>741_bases ATGAACACTCTTCTCTGGATTATTGTCGGCGGTCTGCTGATGAGCGCCATTGCCATGATCGGCGGCATCTCTGTTATCTT GCCGCCTGCAGTGCTGCAGCGATTTCTTCTGCCCATGGTTGCACTTGCCGCGGGAACGCTGCTGGGCGGCGCCTTCTTCC ACATGGTTCCCGAAGGGATAAAGACATTAGTCCCCCTTGATGCGGCGGTATGGCTCGTTGCAGGCTTTACGACGTTCCTT CTCGTGGAACAGTTTCTCCACTGGCATCACTCGCATGACAGTGCGGCCACTGATTATGAGCCCATGACGTATCTGGTTCT CCTCGGGGATGCCTTGCACAACTTTCTCGGCGGAATCGGGATCGCCAGCACGTTTCTCATGGATCCCAAAGCCGGGATTA CTGCATGGTTTGCAGCCGCCGCTCATGAGGTACCTCAGGAACTCGGTGATTTCGCCATATTGGTGCATGGCGGCTGGAAC CGATGGCGGGCGCTGCTCTGGAACGTGATTTCCGCATTGACCTTCCCTCTGGGAGCTCTGCTTGCCTACCTGTTCTCTCA GCGCTTTTCGGTAAGCGGACTGGTTTTATTCGGAGCCGGAAACTTCCTTTACATAGCAGCCTCAGATCTTGTCCCGGAAA TCAAGGCACATCCCAGTCTGCGCGTTGCAGCCCTTCATTTCGGCTGTTTCGCCCTGGGCCTGATCTCCATGCTGGTCCTG GCGTATGGTTTTCACAAATGA
Upstream 100 bases:
>100_bases AGCAGCAACGAAAGTGGATTAATCTGAAGCAAACGGGTTTGATCAACAAGGCTTTTCGTTTTTCCGGCGTACGCGTTTTG TTGCGCATCAGGACACTTCA
Downstream 100 bases:
>100_bases CCCTGCAACTGTTACAGGAATTGAAGGAGGGTCTATGCAACGGGTTTTGATTTCTTCGATTGCAACAGGAAGATCCGCAA CGGGTTGCATGGTTTACAAG
Product: zinc transporter
Products: NA
Alternate protein names: ZIP Zinc Transporter; Zinc Transporter ZIP; Zinc Transporter; Transmembrane Protein; Divalent Heavy-Metal Cations Transporter; Metal Cation Transporter ZIP Family; Zinc Transporter Foi; ZIP Zinc Transporter Family
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MNTLLWIIVGGLLMSAIAMIGGISVILPPAVLQRFLLPMVALAAGTLLGGAFFHMVPEGIKTLVPLDAAVWLVAGFTTFL LVEQFLHWHHSHDSAATDYEPMTYLVLLGDALHNFLGGIGIASTFLMDPKAGITAWFAAAAHEVPQELGDFAILVHGGWN RWRALLWNVISALTFPLGALLAYLFSQRFSVSGLVLFGAGNFLYIAASDLVPEIKAHPSLRVAALHFGCFALGLISMLVL AYGFHK
Sequences:
>Translated_246_residues MNTLLWIIVGGLLMSAIAMIGGISVILPPAVLQRFLLPMVALAAGTLLGGAFFHMVPEGIKTLVPLDAAVWLVAGFTTFL LVEQFLHWHHSHDSAATDYEPMTYLVLLGDALHNFLGGIGIASTFLMDPKAGITAWFAAAAHEVPQELGDFAILVHGGWN RWRALLWNVISALTFPLGALLAYLFSQRFSVSGLVLFGAGNFLYIAASDLVPEIKAHPSLRVAALHFGCFALGLISMLVL AYGFHK >Mature_246_residues MNTLLWIIVGGLLMSAIAMIGGISVILPPAVLQRFLLPMVALAAGTLLGGAFFHMVPEGIKTLVPLDAAVWLVAGFTTFL LVEQFLHWHHSHDSAATDYEPMTYLVLLGDALHNFLGGIGIASTFLMDPKAGITAWFAAAAHEVPQELGDFAILVHGGWN RWRALLWNVISALTFPLGALLAYLFSQRFSVSGLVLFGAGNFLYIAASDLVPEIKAHPSLRVAALHFGCFALGLISMLVL AYGFHK
Specific function: Unknown
COG id: COG0428
COG function: function code P; Predicted divalent heavy-metal cations transporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI187936949, Length=128, Percent_Identity=34.375, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI55741750, Length=128, Percent_Identity=34.375, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI40255101, Length=228, Percent_Identity=28.0701754385965, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI153252201, Length=144, Percent_Identity=32.6388888888889, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI223633937, Length=219, Percent_Identity=29.6803652968037, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI190014617, Length=232, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI190358541, Length=119, Percent_Identity=34.453781512605, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI205830424, Length=119, Percent_Identity=34.453781512605, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI190360568, Length=119, Percent_Identity=34.453781512605, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI223633939, Length=111, Percent_Identity=36.036036036036, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI205830407, Length=114, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI24586665, Length=114, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI205830403, Length=114, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI205830405, Length=114, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI205830426, Length=115, Percent_Identity=33.9130434782609, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI153252214, Length=112, Percent_Identity=33.9285714285714, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193209531, Length=216, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994730, Length=241, Percent_Identity=26.1410788381743, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17538884, Length=112, Percent_Identity=33.0357142857143, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71998183, Length=147, Percent_Identity=34.6938775510204, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71992548, Length=122, Percent_Identity=31.9672131147541, Blast_Score=71, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322166, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI45549201, Length=136, Percent_Identity=35.2941176470588, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI161083817, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24651189, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651193, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651187, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651191, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651195, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651197, Length=163, Percent_Identity=33.7423312883436, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24664383, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26479; Mature: 26479
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLLWIIVGGLLMSAIAMIGGISVILPPAVLQRFLLPMVALAAGTLLGGAFFHMVPEGI CCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTLVPLDAAVWLVAGFTTFLLVEQFLHWHHSHDSAATDYEPMTYLVLLGDALHNFLGGIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IASTFLMDPKAGITAWFAAAAHEVPQELGDFAILVHGGWNRWRALLWNVISALTFPLGAL HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH LAYLFSQRFSVSGLVLFGAGNFLYIAASDLVPEIKAHPSLRVAALHFGCFALGLISMLVL HHHHHHHCCCCCCEEEEECCCEEEEEECHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AYGFHK HHCCCC >Mature Secondary Structure MNTLLWIIVGGLLMSAIAMIGGISVILPPAVLQRFLLPMVALAAGTLLGGAFFHMVPEGI CCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTLVPLDAAVWLVAGFTTFLLVEQFLHWHHSHDSAATDYEPMTYLVLLGDALHNFLGGIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IASTFLMDPKAGITAWFAAAAHEVPQELGDFAILVHGGWNRWRALLWNVISALTFPLGAL HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH LAYLFSQRFSVSGLVLFGAGNFLYIAASDLVPEIKAHPSLRVAALHFGCFALGLISMLVL HHHHHHHCCCCCCEEEEECCCEEEEEECHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH AYGFHK HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA