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The map label for this gene is ydaM [H]

Identifier: 85860347

GI number: 85860347

Start: 2524242

End: 2525690

Strand: Direct

Name: ydaM [H]

Synonym: SYN_00856

Alternate gene names: 85860347

Gene position: 2524242-2525690 (Clockwise)

Preceding gene: 85860346

Following gene: 85860348

Centisome position: 79.4

GC content: 51.14

Gene sequence:

>1449_bases
ATGAAAGCGATCCTTGTTTCGATTATAATCGGCTTCAATTACTTCATTGGTTTCTACTATGGATTTGTCCAGGTCATTTA
CACTCTCATGCTGACAATCGCCCTTGTGGTCATCCTCCGGCATCTCAACAGAATCCGGTATGCCCCTTTCAGAGACCTTG
AAAAGCGTTCAGAGATGCCTCCTGTCAGCATCATCATCCCTGCCAGGAATGAAAGCGAAGTCATTATCAGGAGCATCGAG
TCTTCACTGACCATGAACTACCCCGGACTGGAGGTGATTGTCGTCAATGACGGTTCAACGGATGGCATGCTGGATATGCT
GATTTCCCACTACTCGCTGCAGCGCATTGACCCCTTGTACCGCGACCTGATCAAAACCCGGCCTGTCAGAGGGTTTTACT
GCACCAGCAAAATTCCCAATCTGCTCATTGTGGACAAGGAAAACGGAGGCAAGGCGGATGCGATCAACTGTGCGATCAAT
GTCTGCAGGTCTCCCTATGTCTGTGTCCAGGACGCGGATTCCGTTCTGGAAAAAGATGCCCTGATTCGACTTGCCACGCC
TCTGGTTCAAAGCGAGGTGCCGGTTATCGCCTGCGGCGGTGTCGTCCGGGTTCTGAACGGGACAAAGCAGGAGGGCAATG
TCGTAACCTCGATTGAACTTCCCAGGCGCAGCACACTGGCCTGTTTCCAGATCGTTGAATATCTGCGGAGTTTTCTGTTC
GGCCGGGTCGGTCTGGATGCAATGAACTGCAATCTGGTGATATCAGGCGCCTTCTCTTTTTTCCAGAAGGCCGCGCTTCT
CAACATCGGTGGTTTCGCCACCGACAATGTGGCTGAGGACATGGAATTGATCGTCCGCATGCATCGGCACTACAGGCTGA
AAAAAATACCCTACCGGATCCGCTTTATTTCTGATCCCATCTGCTGGACGGAGGTACCGGAAACATTCAGGATGCTGGGA
CGTCAGCGGCGACGATGGCATCTGGGGATGATCCAGACGGTCTGGAAACATAAATCGCTGATTTTCAATCCGCGCTATGG
ACAGATCGGACTGTTCGCGATGCCCTACACCGTTTTTGTCGAGATGATCAGCCCGCTGCTCGAGTTCCTCGGCTACATCG
TCATCCCCCTGTCCTATTTCTTCGGGCTGATCAATGCGGATTATTTCCTGCTGTTTCTGGCGCTCGCGATTGCATACGGG
GTTTTCCTGTCCACGATGGGAATTTTTCTCGAAGAAATCACTTTCCGCCGCTATCCGAAATGGAGCGACCTCTTCAAACT
GCTTCTCTACGGAGTGCTGGAAAATATCGGCTACCGCCAGCTCAATTCATTCTGGCGATTTCAGGCGTTTTTTCAATTTC
TCTTCGGACGCATCAAATGGGAGCACGTCAAAAAGAAGGGAGACTCGCCATCACAAATGCGTGTTTCAACGGTTCATTCC
GAATCTTAA

Upstream 100 bases:

>100_bases
CAGGATTCCCCACGCCGATGCGTGAAGCGATCGAAGCCGGCTGCATCGGGCCGGAATTAAGCAAAGAATTGGCCGAAGTC
CCGCAGACAGGAGGTGCCGT

Downstream 100 bases:

>100_bases
CCCTGTAACCGGCATGAAATTAAAGGATGCCATGATTTTTGTTCAACAGGATCAGGGATGTTCATATGCATATCGCCGCA
TCTGCTGATCTTGAAATTCC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MKAILVSIIIGFNYFIGFYYGFVQVIYTLMLTIALVVILRHLNRIRYAPFRDLEKRSEMPPVSIIIPARNESEVIIRSIE
SSLTMNYPGLEVIVVNDGSTDGMLDMLISHYSLQRIDPLYRDLIKTRPVRGFYCTSKIPNLLIVDKENGGKADAINCAIN
VCRSPYVCVQDADSVLEKDALIRLATPLVQSEVPVIACGGVVRVLNGTKQEGNVVTSIELPRRSTLACFQIVEYLRSFLF
GRVGLDAMNCNLVISGAFSFFQKAALLNIGGFATDNVAEDMELIVRMHRHYRLKKIPYRIRFISDPICWTEVPETFRMLG
RQRRRWHLGMIQTVWKHKSLIFNPRYGQIGLFAMPYTVFVEMISPLLEFLGYIVIPLSYFFGLINADYFLLFLALAIAYG
VFLSTMGIFLEEITFRRYPKWSDLFKLLLYGVLENIGYRQLNSFWRFQAFFQFLFGRIKWEHVKKKGDSPSQMRVSTVHS
ES

Sequences:

>Translated_482_residues
MKAILVSIIIGFNYFIGFYYGFVQVIYTLMLTIALVVILRHLNRIRYAPFRDLEKRSEMPPVSIIIPARNESEVIIRSIE
SSLTMNYPGLEVIVVNDGSTDGMLDMLISHYSLQRIDPLYRDLIKTRPVRGFYCTSKIPNLLIVDKENGGKADAINCAIN
VCRSPYVCVQDADSVLEKDALIRLATPLVQSEVPVIACGGVVRVLNGTKQEGNVVTSIELPRRSTLACFQIVEYLRSFLF
GRVGLDAMNCNLVISGAFSFFQKAALLNIGGFATDNVAEDMELIVRMHRHYRLKKIPYRIRFISDPICWTEVPETFRMLG
RQRRRWHLGMIQTVWKHKSLIFNPRYGQIGLFAMPYTVFVEMISPLLEFLGYIVIPLSYFFGLINADYFLLFLALAIAYG
VFLSTMGIFLEEITFRRYPKWSDLFKLLLYGVLENIGYRQLNSFWRFQAFFQFLFGRIKWEHVKKKGDSPSQMRVSTVHS
ES
>Mature_482_residues
MKAILVSIIIGFNYFIGFYYGFVQVIYTLMLTIALVVILRHLNRIRYAPFRDLEKRSEMPPVSIIIPARNESEVIIRSIE
SSLTMNYPGLEVIVVNDGSTDGMLDMLISHYSLQRIDPLYRDLIKTRPVRGFYCTSKIPNLLIVDKENGGKADAINCAIN
VCRSPYVCVQDADSVLEKDALIRLATPLVQSEVPVIACGGVVRVLNGTKQEGNVVTSIELPRRSTLACFQIVEYLRSFLF
GRVGLDAMNCNLVISGAFSFFQKAALLNIGGFATDNVAEDMELIVRMHRHYRLKKIPYRIRFISDPICWTEVPETFRMLG
RQRRRWHLGMIQTVWKHKSLIFNPRYGQIGLFAMPYTVFVEMISPLLEFLGYIVIPLSYFFGLINADYFLLFLALAIAYG
VFLSTMGIFLEEITFRRYPKWSDLFKLLLYGVLENIGYRQLNSFWRFQAFFQFLFGRIKWEHVKKKGDSPSQMRVSTVHS
ES

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=321, Percent_Identity=26.1682242990654, Blast_Score=99, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 55423; Mature: 55423

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAILVSIIIGFNYFIGFYYGFVQVIYTLMLTIALVVILRHLNRIRYAPFRDLEKRSEMP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
PVSIIIPARNESEVIIRSIESSLTMNYPGLEVIVVNDGSTDGMLDMLISHYSLQRIDPLY
CEEEEEECCCCCHHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHH
RDLIKTRPVRGFYCTSKIPNLLIVDKENGGKADAINCAINVCRSPYVCVQDADSVLEKDA
HHHHHCCCCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHH
LIRLATPLVQSEVPVIACGGVVRVLNGTKQEGNVVTSIELPRRSTLACFQIVEYLRSFLF
HHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
GRVGLDAMNCNLVISGAFSFFQKAALLNIGGFATDNVAEDMELIVRMHRHYRLKKIPYRI
HHCCCCEECCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
RFISDPICWTEVPETFRMLGRQRRRWHLGMIQTVWKHKSLIFNPRYGQIGLFAMPYTVFV
EEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHH
EMISPLLEFLGYIVIPLSYFFGLINADYFLLFLALAIAYGVFLSTMGIFLEEITFRRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WSDLFKLLLYGVLENIGYRQLNSFWRFQAFFQFLFGRIKWEHVKKKGDSPSQMRVSTVHS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
ES
CC
>Mature Secondary Structure
MKAILVSIIIGFNYFIGFYYGFVQVIYTLMLTIALVVILRHLNRIRYAPFRDLEKRSEMP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
PVSIIIPARNESEVIIRSIESSLTMNYPGLEVIVVNDGSTDGMLDMLISHYSLQRIDPLY
CEEEEEECCCCCHHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHH
RDLIKTRPVRGFYCTSKIPNLLIVDKENGGKADAINCAINVCRSPYVCVQDADSVLEKDA
HHHHHCCCCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHH
LIRLATPLVQSEVPVIACGGVVRVLNGTKQEGNVVTSIELPRRSTLACFQIVEYLRSFLF
HHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
GRVGLDAMNCNLVISGAFSFFQKAALLNIGGFATDNVAEDMELIVRMHRHYRLKKIPYRI
HHCCCCEECCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
RFISDPICWTEVPETFRMLGRQRRRWHLGMIQTVWKHKSLIFNPRYGQIGLFAMPYTVFV
EEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEHHHHHHHHH
EMISPLLEFLGYIVIPLSYFFGLINADYFLLFLALAIAYGVFLSTMGIFLEEITFRRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WSDLFKLLLYGVLENIGYRQLNSFWRFQAFFQFLFGRIKWEHVKKKGDSPSQMRVSTVHS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
ES
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]