| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85860343
Identifier: 85860343
GI number: 85860343
Start: 2519290
End: 2521701
Strand: Direct
Name: 85860343
Synonym: SYN_00859
Alternate gene names: NA
Gene position: 2519290-2521701 (Clockwise)
Preceding gene: 85860342
Following gene: 85860345
Centisome position: 79.24
GC content: 56.26
Gene sequence:
>2412_bases ATGCATAATCCCATAAACCATGAAGATCTTGGTTTTTTTGCACTGAAACAGGGGCATTTCCCGGAAGCTGTCAATATCTT CCGGCGCGCCCTCGATGAAAAGAAGACAGCCCGGGCCTATTTTGGTTTTGGAATTGCCCACGACAGGCTGGAAGACTTTC CGACTGCCCGCTGGGCCTATTACAAGGCCCTGGACATCGATCCCCAAAGCGTGGAGATTCAGCAGCACATCGATGAAGTG GACAGACGTATCGCCGCCCTTGCGGGCAGTTCCCATCCGAAGCGGCGCGAAGTGCGATTCAGGGCCTTGAAGGACACCTT CGAAGTCTTGACCGGCAGAACCTGGAAACCTCTTTTTGTCAAGGCCATCAATCTCGGCCTCGCCCCTCCCGGCTCCTATC CCGGCGAATATGCCATCCGGAAAGGAACCTACCGGGCCTGGTTCGAACAGATGCAGGCCCTCGGCTTCAACGCAGTCAGA ATCTACACACTCCACCCACCGGCTTTTTACGAAGCGCTTTACGAATTCAACGAAAAGCGCGGGAAGCTGTTTCTTCTGCA GGGCATCTGGGCGGAGCTTCCAGATAACGGCGATTTTGGTCACGACCTTTATCTTCGCTATATCAGACAGCAGATCACCG AGGCCGTGGATGGCGTTTTCGGCAGCGGCTCCCTCCCTGAACGTCCGGGCTATCCGCATGGAACCTATACCTGCGACGTT TCTCCCTGCACGCTCGGATTTATTGTGGGCAGAGAATGGGAAAGCTGCCCCGTTGCCGCCTTCAACAGCAAAGAAGGGAG AAGGCTGAACGATTCTGACGGCTCCTTCATTCAAGTTTCGGCAGGCACCCCCTTCGAGAACTGGATCGGCCGGATAGGCG ACTTTCTGCTCGGCTATGAGTCGAGCCGTTACGGGACAGTCCATCCCCTTTCAACGATCTGCTGGCCCACGCTGGATCCC CTGGTTCATCCCTCGGAATCCCGTTATGAGGATGATCTTCACCGCCAGGGACAGCGCATCCGCACAGAGGGATGCAACGA AAATGAAGACGTCGAATCTCTCGATCCGGCAAAGTTCAAGGTGAAGCAGGGGGCGGGTTTTTTCGCCACGTACCATGCCT ACCCTTACTATCCCGATTTCATGAACAACGATTATCTCGATGACGAAACGCCCTACCTGTCTTATCTCTCCAATCTCAGG CGGCGCCATGGCAGACAGCCGGTCATCATCGGTGAATTCGGCGTTCCTTCCAGCAGGGAGGTGTCCCACTGGCATGTGAA GGGCTGGCACCACGGCGGCCACAACGAGGTGCGTCAGGGCGAAATCAACGGTGAGATGATGCTGGCGATCCACCGCGCGG GACTGGCGGGCGGGGCTGTGTTCAGCTGGTTTGATGAATGGTTCAAAAAAAACTGGCTTTTCATGGCCTATGAACTGCCG CCGGATCGCAATGCGCTCTGGTTCAATTTCCAGGACGCGGAGCAGAACTATGGCCTTATCGCCGCTTATCCGGGCTATCC GGGCAGGATGGTTTCCCTGTCCGGCAACCGGGAAGAGTGGCAAAACGCAACGCCCCTGTCCCGCAAGGAAGGTCCTCCGC TCTTCCTGTTCGACGACGGGGGCGATGACGCCCGCACCCTGGCGCGTCTTGCGGCTCAGCATGACGAAGGGTTTTTTTAT CTGAGGCTGGAAACGCGGGGTAAAATCGATTTTTCCAAGGCCCATTATGTGATCGGACTGGATACCTGCGATCCTTCAGC AGGCGAGTTTGTCCTTCCCTTCAACCTCAATGTCACCAGTCCTTTGGGATTGAAATTTATTATTCATCTCTGCGGCGCGG AGAGAAGCCGGATCCTCGTCTGTCCTGCCTACGATAAATATCTGAACGCCGCAAGGCGGGAAATCCATCCGGGCAGATCC TTTGAGGGGGCCTGGATCGTCATGCAGAACAGACCCAATGTCCGCCGCACCAGCAAGGACGGACGGCGCTTCTATCCATC CCGGGTCGTCCCCATGAGCAATCTCAGACAGGGCAGCCTCGACCCGAATCACCGACAATACGATTCCCTCGCCGATTTCT TTGTCAGTGAAACCGCCATTGAACTCCGCATCCCCTGGGGGCTCATCCAGTTTACCGACCCAAGCTCGAAAACGGTACTC TGGAAGAAGGGCGCTGAAGAAACCCGGAAGACCGACGGTATCCGGGCTATTGCCTGCTCCTTCAAGCCGGAAAGTCAAAG CATGGCCGCCGTGCCAACCGGGCGGAACTTGAATGCCGCCGACATGCTGCCCTTGAGCGGCTCGCCGTCACAGACATACA CATGGAAGGAATGGGATACTCCCCTTTATCATTTTTACACCAAACGCAGCGCGGGCATCTATCAGCGCTACCTCGAGAAG CTGCCGTCATGA
Upstream 100 bases:
>100_bases GAAGAGATTCTTTAAAATCTGCAATCTTTGATTCTGCGACAGGGAACGGACATGCCTTGTAAACTTCATCGCCGGCTTTT TCCGCATCGGGAACAGTTTC
Downstream 100 bases:
>100_bases CGAAAAATCTTGATCGAAGAACTTTCCTGAAAGGAGCGGGCGCTCTGCTCGCTCTCCCGTTTATCGGACAGGCCTGTACA TCACTGGCGCCGGTTCTCGA
Product: cytoplasmic protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 803; Mature: 803
Protein sequence:
>803_residues MHNPINHEDLGFFALKQGHFPEAVNIFRRALDEKKTARAYFGFGIAHDRLEDFPTARWAYYKALDIDPQSVEIQQHIDEV DRRIAALAGSSHPKRREVRFRALKDTFEVLTGRTWKPLFVKAINLGLAPPGSYPGEYAIRKGTYRAWFEQMQALGFNAVR IYTLHPPAFYEALYEFNEKRGKLFLLQGIWAELPDNGDFGHDLYLRYIRQQITEAVDGVFGSGSLPERPGYPHGTYTCDV SPCTLGFIVGREWESCPVAAFNSKEGRRLNDSDGSFIQVSAGTPFENWIGRIGDFLLGYESSRYGTVHPLSTICWPTLDP LVHPSESRYEDDLHRQGQRIRTEGCNENEDVESLDPAKFKVKQGAGFFATYHAYPYYPDFMNNDYLDDETPYLSYLSNLR RRHGRQPVIIGEFGVPSSREVSHWHVKGWHHGGHNEVRQGEINGEMMLAIHRAGLAGGAVFSWFDEWFKKNWLFMAYELP PDRNALWFNFQDAEQNYGLIAAYPGYPGRMVSLSGNREEWQNATPLSRKEGPPLFLFDDGGDDARTLARLAAQHDEGFFY LRLETRGKIDFSKAHYVIGLDTCDPSAGEFVLPFNLNVTSPLGLKFIIHLCGAERSRILVCPAYDKYLNAARREIHPGRS FEGAWIVMQNRPNVRRTSKDGRRFYPSRVVPMSNLRQGSLDPNHRQYDSLADFFVSETAIELRIPWGLIQFTDPSSKTVL WKKGAEETRKTDGIRAIACSFKPESQSMAAVPTGRNLNAADMLPLSGSPSQTYTWKEWDTPLYHFYTKRSAGIYQRYLEK LPS
Sequences:
>Translated_803_residues MHNPINHEDLGFFALKQGHFPEAVNIFRRALDEKKTARAYFGFGIAHDRLEDFPTARWAYYKALDIDPQSVEIQQHIDEV DRRIAALAGSSHPKRREVRFRALKDTFEVLTGRTWKPLFVKAINLGLAPPGSYPGEYAIRKGTYRAWFEQMQALGFNAVR IYTLHPPAFYEALYEFNEKRGKLFLLQGIWAELPDNGDFGHDLYLRYIRQQITEAVDGVFGSGSLPERPGYPHGTYTCDV SPCTLGFIVGREWESCPVAAFNSKEGRRLNDSDGSFIQVSAGTPFENWIGRIGDFLLGYESSRYGTVHPLSTICWPTLDP LVHPSESRYEDDLHRQGQRIRTEGCNENEDVESLDPAKFKVKQGAGFFATYHAYPYYPDFMNNDYLDDETPYLSYLSNLR RRHGRQPVIIGEFGVPSSREVSHWHVKGWHHGGHNEVRQGEINGEMMLAIHRAGLAGGAVFSWFDEWFKKNWLFMAYELP PDRNALWFNFQDAEQNYGLIAAYPGYPGRMVSLSGNREEWQNATPLSRKEGPPLFLFDDGGDDARTLARLAAQHDEGFFY LRLETRGKIDFSKAHYVIGLDTCDPSAGEFVLPFNLNVTSPLGLKFIIHLCGAERSRILVCPAYDKYLNAARREIHPGRS FEGAWIVMQNRPNVRRTSKDGRRFYPSRVVPMSNLRQGSLDPNHRQYDSLADFFVSETAIELRIPWGLIQFTDPSSKTVL WKKGAEETRKTDGIRAIACSFKPESQSMAAVPTGRNLNAADMLPLSGSPSQTYTWKEWDTPLYHFYTKRSAGIYQRYLEK LPS >Mature_803_residues MHNPINHEDLGFFALKQGHFPEAVNIFRRALDEKKTARAYFGFGIAHDRLEDFPTARWAYYKALDIDPQSVEIQQHIDEV DRRIAALAGSSHPKRREVRFRALKDTFEVLTGRTWKPLFVKAINLGLAPPGSYPGEYAIRKGTYRAWFEQMQALGFNAVR IYTLHPPAFYEALYEFNEKRGKLFLLQGIWAELPDNGDFGHDLYLRYIRQQITEAVDGVFGSGSLPERPGYPHGTYTCDV SPCTLGFIVGREWESCPVAAFNSKEGRRLNDSDGSFIQVSAGTPFENWIGRIGDFLLGYESSRYGTVHPLSTICWPTLDP LVHPSESRYEDDLHRQGQRIRTEGCNENEDVESLDPAKFKVKQGAGFFATYHAYPYYPDFMNNDYLDDETPYLSYLSNLR RRHGRQPVIIGEFGVPSSREVSHWHVKGWHHGGHNEVRQGEINGEMMLAIHRAGLAGGAVFSWFDEWFKKNWLFMAYELP PDRNALWFNFQDAEQNYGLIAAYPGYPGRMVSLSGNREEWQNATPLSRKEGPPLFLFDDGGDDARTLARLAAQHDEGFFY LRLETRGKIDFSKAHYVIGLDTCDPSAGEFVLPFNLNVTSPLGLKFIIHLCGAERSRILVCPAYDKYLNAARREIHPGRS FEGAWIVMQNRPNVRRTSKDGRRFYPSRVVPMSNLRQGSLDPNHRQYDSLADFFVSETAIELRIPWGLIQFTDPSSKTVL WKKGAEETRKTDGIRAIACSFKPESQSMAAVPTGRNLNAADMLPLSGSPSQTYTWKEWDTPLYHFYTKRSAGIYQRYLEK LPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91712; Mature: 91712
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNPINHEDLGFFALKQGHFPEAVNIFRRALDEKKTARAYFGFGIAHDRLEDFPTARWAY CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEE YKALDIDPQSVEIQQHIDEVDRRIAALAGSSHPKRREVRFRALKDTFEVLTGRTWKPLFV EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH KAINLGLAPPGSYPGEYAIRKGTYRAWFEQMQALGFNAVRIYTLHPPAFYEALYEFNEKR EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC GKLFLLQGIWAELPDNGDFGHDLYLRYIRQQITEAVDGVFGSGSLPERPGYPHGTYTCDV CCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC SPCTLGFIVGREWESCPVAAFNSKEGRRLNDSDGSFIQVSAGTPFENWIGRIGDFLLGYE CCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC SSRYGTVHPLSTICWPTLDPLVHPSESRYEDDLHRQGQRIRTEGCNENEDVESLDPAKFK CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEE VKQGAGFFATYHAYPYYPDFMNNDYLDDETPYLSYLSNLRRRHGRQPVIIGEFGVPSSRE EECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC VSHWHVKGWHHGGHNEVRQGEINGEMMLAIHRAGLAGGAVFSWFDEWFKKNWLFMAYELP CCEEEEECEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECC PDRNALWFNFQDAEQNYGLIAAYPGYPGRMVSLSGNREEWQNATPLSRKEGPPLFLFDDG CCCCEEEEEEECCCCCCCEEEECCCCCCEEEEECCCHHHHCCCCCCCCCCCCCEEEEECC GDDARTLARLAAQHDEGFFYLRLETRGKIDFSKAHYVIGLDTCDPSAGEFVLPFNLNVTS CCHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCC PLGLKFIIHLCGAERSRILVCPAYDKYLNAARREIHPGRSFEGAWIVMQNRPNVRRTSKD CHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC GRRFYPSRVVPMSNLRQGSLDPNHRQYDSLADFFVSETAIELRIPWGLIQFTDPSSKTVL CCEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEECCCCCCEEE WKKGAEETRKTDGIRAIACSFKPESQSMAAVPTGRNLNAADMLPLSGSPSQTYTWKEWDT ECCCCHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCHHHEECCCCCCCCCEEECCCCC PLYHFYTKRSAGIYQRYLEKLPS CCEEEEECCCCHHHHHHHHHCCC >Mature Secondary Structure MHNPINHEDLGFFALKQGHFPEAVNIFRRALDEKKTARAYFGFGIAHDRLEDFPTARWAY CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEE YKALDIDPQSVEIQQHIDEVDRRIAALAGSSHPKRREVRFRALKDTFEVLTGRTWKPLFV EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH KAINLGLAPPGSYPGEYAIRKGTYRAWFEQMQALGFNAVRIYTLHPPAFYEALYEFNEKR EEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC GKLFLLQGIWAELPDNGDFGHDLYLRYIRQQITEAVDGVFGSGSLPERPGYPHGTYTCDV CCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC SPCTLGFIVGREWESCPVAAFNSKEGRRLNDSDGSFIQVSAGTPFENWIGRIGDFLLGYE CCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC SSRYGTVHPLSTICWPTLDPLVHPSESRYEDDLHRQGQRIRTEGCNENEDVESLDPAKFK CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEE VKQGAGFFATYHAYPYYPDFMNNDYLDDETPYLSYLSNLRRRHGRQPVIIGEFGVPSSRE EECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC VSHWHVKGWHHGGHNEVRQGEINGEMMLAIHRAGLAGGAVFSWFDEWFKKNWLFMAYELP CCEEEEECEECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECC PDRNALWFNFQDAEQNYGLIAAYPGYPGRMVSLSGNREEWQNATPLSRKEGPPLFLFDDG CCCCEEEEEEECCCCCCCEEEECCCCCCEEEEECCCHHHHCCCCCCCCCCCCCEEEEECC GDDARTLARLAAQHDEGFFYLRLETRGKIDFSKAHYVIGLDTCDPSAGEFVLPFNLNVTS CCHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCC PLGLKFIIHLCGAERSRILVCPAYDKYLNAARREIHPGRSFEGAWIVMQNRPNVRRTSKD CHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC GRRFYPSRVVPMSNLRQGSLDPNHRQYDSLADFFVSETAIELRIPWGLIQFTDPSSKTVL CCEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEECCCCCCEEE WKKGAEETRKTDGIRAIACSFKPESQSMAAVPTGRNLNAADMLPLSGSPSQTYTWKEWDT ECCCCHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCHHHEECCCCCCCCCEEECCCCC PLYHFYTKRSAGIYQRYLEKLPS CCEEEEECCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA