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The map label for this gene is cspB [H]

Identifier: 85860247

GI number: 85860247

Start: 2438394

End: 2438597

Strand: Direct

Name: cspB [H]

Synonym: SYN_02488

Alternate gene names: 85860247

Gene position: 2438394-2438597 (Clockwise)

Preceding gene: 85860246

Following gene: 85860248

Centisome position: 76.7

GC content: 47.55

Gene sequence:

>204_bases
ATGATGCCGGAAGGAACAGTTAAATGGTTTAATGATTCAAAAGGATTTGGTTTTATCGCACAGGACAGCGGCAATGATGT
CTTCGTACATTATTCAGCCATCCAGGGAACAGGATTTAAAACGCTGGCAGAAAGCGAACGCGTCAGTTTCGACGTTGTCC
AGGGCGCCAAGGGACCTTCCGCCGAAAATGTTCGCAAGCTCTGA

Upstream 100 bases:

>100_bases
GATCCTCATTACACAAATATTCTGCTGATTTTATTTCTGCAAACCGATTGACCCATCAGAGCTCATATTGAAAAGACCAA
CATAATTATAAAGGAGAATA

Downstream 100 bases:

>100_bases
GAGCTGAATTCATTTTACGTTAAGAAGCCTCCGATCTCAGGGGGCTTTTTTTATTGCCATCATCCAGAACCTGAAGATCA
GCACAGGCAATGCACGGATA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MMPEGTVKWFNDSKGFGFIAQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGAKGPSAENVRKL

Sequences:

>Translated_67_residues
MMPEGTVKWFNDSKGFGFIAQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGAKGPSAENVRKL
>Mature_67_residues
MMPEGTVKWFNDSKGFGFIAQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGAKGPSAENVRKL

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=66.1538461538461, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=61.5384615384615, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=60.9375, Blast_Score=79, Evalue=8e-17,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=56.25, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=56.25, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=55.7377049180328, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7285; Mature: 7285

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPEGTVKWFNDSKGFGFIAQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGAKGPS
CCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC
AENVRKL
CCCCCCC
>Mature Secondary Structure
MMPEGTVKWFNDSKGFGFIAQDSGNDVFVHYSAIQGTGFKTLAESERVSFDVVQGAKGPS
CCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC
AENVRKL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294017; 10736231 [H]