| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is yqeM [H]
Identifier: 85860111
GI number: 85860111
Start: 2318900
End: 2319685
Strand: Direct
Name: yqeM [H]
Synonym: SYN_00826
Alternate gene names: 85860111
Gene position: 2318900-2319685 (Clockwise)
Preceding gene: 85860110
Following gene: 85860112
Centisome position: 72.94
GC content: 49.11
Gene sequence:
>786_bases ATGGTTGATACACCTTTTCAGAAACAATACGCAGAAGCCTATGATTTCCTGTATCAGGACAAGGATTATGCGGTGGAATG CGATCTCATCGAGGATATCTTCAGAAAATTTGCCACCGCCCAGGTACGAACCATCCTCGATCTCGGCTGTGGTACGGGCA ACCACACCATCCCGCTGGCCTATCGGGGATATCAGGTAACGGGCGTCGATCTGGCGGAAGATATGCTGAATCAGGCCAGG TCAAAAGCGGTTTCCCTTTCGAAAGAACAAATTGTTTTTCATCAAGGGGATCTGCGCCGGTTTTCCATCCTGTATGATTT TGACGCGGTGCTGATGATGTTCGCAGTTCTGGGTTATCAAACGACCAATGAAGACGTTCTGGCCGCCCTGAACACCGTCA GCCGTCACCTGAAACCCGGTGGGCTGTTTATCTTTGATGTCTGGTATGGCCCTGCCGTTCTGAAGCAGAGACCGGGAGAG AAGGAGAAAACAATCCGGACGGCGGAAGGTGATATCATCCGGAATGCATCTGGCACCCTGGATGTTTTCCGGCATCTGTG TGAAGTCCGTTATCACCTGAAATATTTGAAAGGTCATAAAATTATTAAGGATACAGAAGAAATACATAATATGCGTTATT TCTTCCCTCAGGAACTGGCCTTTTTCATGCACCAGGCGGAATTGGAGCTAATCCACATCAGCGACGTCGGGGATTTATCC CGTCCGCCGACGGAAGAGACCTGGAATGTGATTGTGGCTGGCAGGAAAATTATAAATGCCCGCTGA
Upstream 100 bases:
>100_bases AGAGGCGGTAAAGAATGCCTTGTGTTGAAAGCTAATCTGATCCACGCGGGGAAGAAAACCGGCACCAGAAATAATCTTTC GAAATTCTTGTTTAATTTTT
Downstream 100 bases:
>100_bases TAAAGAATTCGTAAAAACATGAGTAAAATTATTATTGAGGCAGGTCACACAGAGAAAAACTACTGGACCGATCTCTGGCG TTATCGGGAGCTTTTTCTGG
Product: SAM-dependent methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS RPPTEETWNVIVAGRKIINAR
Sequences:
>Translated_261_residues MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS RPPTEETWNVIVAGRKIINAR >Mature_261_residues MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS RPPTEETWNVIVAGRKIINAR
Specific function: May be a S-adenosyl-L-methionine (SAM)-dependent methyltransferase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013216 [H]
Pfam domain/function: PF08241 Methyltransf_11 [H]
EC number: NA
Molecular weight: Translated: 29988; Mature: 29988
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLA CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE YRGYQVTGVDLAEDMLNQARSKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQ ECCEEEECCHHHHHHHHHHHHHHHCCCHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCC TTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGEKEKTIRTAEGDIIRNASGTL CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEECCCCHH DVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCCCC RPPTEETWNVIVAGRKIINAR CCCCCHHCEEEEECCCHHCCC >Mature Secondary Structure MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLA CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE YRGYQVTGVDLAEDMLNQARSKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQ ECCEEEECCHHHHHHHHHHHHHHHCCCHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCC TTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGEKEKTIRTAEGDIIRNASGTL CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEECCCCHH DVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCCCC RPPTEETWNVIVAGRKIINAR CCCCCHHCEEEEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 7968523 [H]