Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

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The map label for this gene is yqeM [H]

Identifier: 85860111

GI number: 85860111

Start: 2318900

End: 2319685

Strand: Direct

Name: yqeM [H]

Synonym: SYN_00826

Alternate gene names: 85860111

Gene position: 2318900-2319685 (Clockwise)

Preceding gene: 85860110

Following gene: 85860112

Centisome position: 72.94

GC content: 49.11

Gene sequence:

>786_bases
ATGGTTGATACACCTTTTCAGAAACAATACGCAGAAGCCTATGATTTCCTGTATCAGGACAAGGATTATGCGGTGGAATG
CGATCTCATCGAGGATATCTTCAGAAAATTTGCCACCGCCCAGGTACGAACCATCCTCGATCTCGGCTGTGGTACGGGCA
ACCACACCATCCCGCTGGCCTATCGGGGATATCAGGTAACGGGCGTCGATCTGGCGGAAGATATGCTGAATCAGGCCAGG
TCAAAAGCGGTTTCCCTTTCGAAAGAACAAATTGTTTTTCATCAAGGGGATCTGCGCCGGTTTTCCATCCTGTATGATTT
TGACGCGGTGCTGATGATGTTCGCAGTTCTGGGTTATCAAACGACCAATGAAGACGTTCTGGCCGCCCTGAACACCGTCA
GCCGTCACCTGAAACCCGGTGGGCTGTTTATCTTTGATGTCTGGTATGGCCCTGCCGTTCTGAAGCAGAGACCGGGAGAG
AAGGAGAAAACAATCCGGACGGCGGAAGGTGATATCATCCGGAATGCATCTGGCACCCTGGATGTTTTCCGGCATCTGTG
TGAAGTCCGTTATCACCTGAAATATTTGAAAGGTCATAAAATTATTAAGGATACAGAAGAAATACATAATATGCGTTATT
TCTTCCCTCAGGAACTGGCCTTTTTCATGCACCAGGCGGAATTGGAGCTAATCCACATCAGCGACGTCGGGGATTTATCC
CGTCCGCCGACGGAAGAGACCTGGAATGTGATTGTGGCTGGCAGGAAAATTATAAATGCCCGCTGA

Upstream 100 bases:

>100_bases
AGAGGCGGTAAAGAATGCCTTGTGTTGAAAGCTAATCTGATCCACGCGGGGAAGAAAACCGGCACCAGAAATAATCTTTC
GAAATTCTTGTTTAATTTTT

Downstream 100 bases:

>100_bases
TAAAGAATTCGTAAAAACATGAGTAAAATTATTATTGAGGCAGGTCACACAGAGAAAAACTACTGGACCGATCTCTGGCG
TTATCGGGAGCTTTTTCTGG

Product: SAM-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR
SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE
KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS
RPPTEETWNVIVAGRKIINAR

Sequences:

>Translated_261_residues
MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR
SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE
KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS
RPPTEETWNVIVAGRKIINAR
>Mature_261_residues
MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQAR
SKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQTTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGE
KEKTIRTAEGDIIRNASGTLDVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS
RPPTEETWNVIVAGRKIINAR

Specific function: May be a S-adenosyl-L-methionine (SAM)-dependent methyltransferase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 29988; Mature: 29988

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLA
CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
YRGYQVTGVDLAEDMLNQARSKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQ
ECCEEEECCHHHHHHHHHHHHHHHCCCHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCC
TTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGEKEKTIRTAEGDIIRNASGTL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEECCCCHH
DVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCCCC
RPPTEETWNVIVAGRKIINAR
CCCCCHHCEEEEECCCHHCCC
>Mature Secondary Structure
MVDTPFQKQYAEAYDFLYQDKDYAVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLA
CCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
YRGYQVTGVDLAEDMLNQARSKAVSLSKEQIVFHQGDLRRFSILYDFDAVLMMFAVLGYQ
ECCEEEECCHHHHHHHHHHHHHHHCCCHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCC
TTNEDVLAALNTVSRHLKPGGLFIFDVWYGPAVLKQRPGEKEKTIRTAEGDIIRNASGTL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEECCCCHH
DVFRHLCEVRYHLKYLKGHKIIKDTEEIHNMRYFFPQELAFFMHQAELELIHISDVGDLS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCCCC
RPPTEETWNVIVAGRKIINAR
CCCCCHHCEEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7968523 [H]