Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 85860099

GI number: 85860099

Start: 2308324

End: 2308743

Strand: Direct

Name: ssb [H]

Synonym: SYN_00925

Alternate gene names: 85860099

Gene position: 2308324-2308743 (Clockwise)

Preceding gene: 85860087

Following gene: 85860102

Centisome position: 72.6

GC content: 53.33

Gene sequence:

>420_bases
ATGATTAATAAAGCGATCCTGATCGGCAGACTGGGAAAAGACCCTGAAGTGCGCTACACGCCTGACGGCGCCATGGTTAC
AAGTTTCAGTCTGGCCACGGACAGGCAGTGGAAAGATAAAAACGGGGAGAGAGCACAGGAAACGGAGTGGCACAACATCG
TTGTCTTCGGCAAGCTGGCGGAGATCTGCGGAAATTATCTTGCCAAGGGACTTCTGGTTTATATCGAAGGCCGGATCAGG
AGCCGTTCCTGGGAAGGAAAGGACGGCGTTAAGCGCTATACGACTGAAATCATCGCTCAGGACATGAAAATGCTCAGCCC
GAAAGGGGCTGATCGCGGGGAGGTCCGAACGCAGGCTGAAGGACACTTCTCGCCTTTCAATGATTTACCGCCGCTTCCTG
AAGATGACGTCCCCTTCTGA

Upstream 100 bases:

>100_bases
TCCAACGAAAATCCCTTTCCGAGATTGCCAATCCGGAATGATTTGTGTATAGGGAAAAGGATCGGCATTAAATTCAAAAA
AGGAGGATAACGAAAATTCC

Downstream 100 bases:

>100_bases
TGTCAGGCCGCCTTACACAGACTGACAGAGCGCGTCGACTTCTTCCTGCCGTCCCGTTATCCTCTATATAAAACACAAAC
GGGTATAAGGCGGAGGGAAG

Product: single-strand DNA binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MINKAILIGRLGKDPEVRYTPDGAMVTSFSLATDRQWKDKNGERAQETEWHNIVVFGKLAEICGNYLAKGLLVYIEGRIR
SRSWEGKDGVKRYTTEIIAQDMKMLSPKGADRGEVRTQAEGHFSPFNDLPPLPEDDVPF

Sequences:

>Translated_139_residues
MINKAILIGRLGKDPEVRYTPDGAMVTSFSLATDRQWKDKNGERAQETEWHNIVVFGKLAEICGNYLAKGLLVYIEGRIR
SRSWEGKDGVKRYTTEIIAQDMKMLSPKGADRGEVRTQAEGHFSPFNDLPPLPEDDVPF
>Mature_139_residues
MINKAILIGRLGKDPEVRYTPDGAMVTSFSLATDRQWKDKNGERAQETEWHNIVVFGKLAEICGNYLAKGLLVYIEGRIR
SRSWEGKDGVKRYTTEIIAQDMKMLSPKGADRGEVRTQAEGHFSPFNDLPPLPEDDVPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=118, Percent_Identity=34.7457627118644, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790494, Length=108, Percent_Identity=51.8518518518518, Blast_Score=122, Evalue=1e-29,
Organism=Drosophila melanogaster, GI85725234, Length=102, Percent_Identity=36.2745098039216, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24647376, Length=102, Percent_Identity=36.2745098039216, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15697; Mature: 15697

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKAILIGRLGKDPEVRYTPDGAMVTSFSLATDRQWKDKNGERAQETEWHNIVVFGKLA
CCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEHHHH
EICGNYLAKGLLVYIEGRIRSRSWEGKDGVKRYTTEIIAQDMKMLSPKGADRGEVRTQAE
HHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
GHFSPFNDLPPLPEDDVPF
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MINKAILIGRLGKDPEVRYTPDGAMVTSFSLATDRQWKDKNGERAQETEWHNIVVFGKLA
CCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEHHHH
EICGNYLAKGLLVYIEGRIRSRSWEGKDGVKRYTTEIIAQDMKMLSPKGADRGEVRTQAE
HHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
GHFSPFNDLPPLPEDDVPF
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]