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The map label for this gene is queD [H]

Identifier: 85860084

GI number: 85860084

Start: 2291397

End: 2291876

Strand: Direct

Name: queD [H]

Synonym: SYN_01559

Alternate gene names: 85860084

Gene position: 2291397-2291876 (Clockwise)

Preceding gene: 85860082

Following gene: 85860085

Centisome position: 72.07

GC content: 51.67

Gene sequence:

>480_bases
ATGAGCCTGCGATTCCCTATGCGTGGGTTAAAAATATCGGCGGATTTTTCAGGAAAAAGAACAGCCCCCTCGGCAGAATC
CAAAAGGAGCCTTTCGTTTATGCCCGGTGTTTTTGAAATCAGCATTGAAGAGCAGTTTTCAGCGGCCCATGCACTGCGGA
ACTATCCCGGAAACTGTGAACACCTTCATGGTCATAACTGGGCCGTCGAGGTCACCGTCGAGTGCGAGGAGTTGAATGAA
ATCGGAATCGGCATCGATTTCCGGGAGGTCAAGCAATCCGTGCGGGAGGCTCTGCATCGCCTGGATCATGTCAACCTGAA
TGAACTGCCGCAGTTCTGCGACATCAACCCCTCATCGGAAAACATCGCCCGTCATCTCTACAACGAACTGAGTCGGAAAC
TGAATACGGAAAAGATCAGGGTCTCACGGGTCAGGGTTTCCGAAACGCCGACAAGCAAAGCCTCTTACCGGGAGATATGA

Upstream 100 bases:

>100_bases
ATCTCCCGGCAAACTCCGGGAACTGTCCGGAGCTTTCCCCCCGGGAGAGGCTCCGGAATTTTTTATTGCTTTTCCCGGTA
CAGGCTGTATATAAGGCAGC

Downstream 100 bases:

>100_bases
GGTGCCCCTGAAGGTCAACGAGATTTTCTACAGCATTCAGGGAGAATCCTCCTTTATCGGCATTCCCTGCGTTTTCGTCC
GGCTGACCGGCTGCAATCTC

Product: queuosine biosynthesis protein

Products: 6-pyruvoyl-5,6,7,8-tetrahydropterin; triphosphate

Alternate protein names: CPH4 synthase; Archaeosine biosynthesis protein queD [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSLRFPMRGLKISADFSGKRTAPSAESKRSLSFMPGVFEISIEEQFSAAHALRNYPGNCEHLHGHNWAVEVTVECEELNE
IGIGIDFREVKQSVREALHRLDHVNLNELPQFCDINPSSENIARHLYNELSRKLNTEKIRVSRVRVSETPTSKASYREI

Sequences:

>Translated_159_residues
MSLRFPMRGLKISADFSGKRTAPSAESKRSLSFMPGVFEISIEEQFSAAHALRNYPGNCEHLHGHNWAVEVTVECEELNE
IGIGIDFREVKQSVREALHRLDHVNLNELPQFCDINPSSENIARHLYNELSRKLNTEKIRVSRVRVSETPTSKASYREI
>Mature_158_residues
SLRFPMRGLKISADFSGKRTAPSAESKRSLSFMPGVFEISIEEQFSAAHALRNYPGNCEHLHGHNWAVEVTVECEELNEI
GIGIDFREVKQSVREALHRLDHVNLNELPQFCDINPSSENIARHLYNELSRKLNTEKIRVSRVRVSETPTSKASYREI

Specific function: Catalyzes the conversion of 7,8-dihydroneopterin triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) and acetaldehyde [H]

COG id: COG0720

COG function: function code H; 6-pyruvoyl-tetrahydropterin synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTPS family. QueD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007115 [H]

Pfam domain/function: PF01242 PTPS [H]

EC number: 4.2.3.12

Molecular weight: Translated: 18151; Mature: 18020

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRFPMRGLKISADFSGKRTAPSAESKRSLSFMPGVFEISIEEQFSAAHALRNYPGNCE
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
HLHGHNWAVEVTVECEELNEIGIGIDFREVKQSVREALHRLDHVNLNELPQFCDINPSSE
EECCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHCCCCCCHH
NIARHLYNELSRKLNTEKIRVSRVRVSETPTSKASYREI
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SLRFPMRGLKISADFSGKRTAPSAESKRSLSFMPGVFEISIEEQFSAAHALRNYPGNCE
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
HLHGHNWAVEVTVECEELNEIGIGIDFREVKQSVREALHRLDHVNLNELPQFCDINPSSE
EECCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHCCCCCCHH
NIARHLYNELSRKLNTEKIRVSRVRVSETPTSKASYREI
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mg2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 17.7 {6-(L-erythro-1,2-dihydroxypropyl} 5 {6-(L-erythro-1,2-dihydroxypropyl} 0.0091 {6-(L-erythro-1,2-dihydroxypropyl} 0.008 {6-(L-erythro-1,2-dihydroxypropyl} [C]

Substrates: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin

Specific reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate

General reaction: Intramolecular redox reaction; P-O bond cleavage; Triphosphate elimination [C]

Inhibitor: (NH4)2SO4 [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]