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The map label for this gene is gspD [H]

Identifier: 85860072

GI number: 85860072

Start: 2280323

End: 2282128

Strand: Direct

Name: gspD [H]

Synonym: SYN_01548

Alternate gene names: 85860072

Gene position: 2280323-2282128 (Clockwise)

Preceding gene: 85860071

Following gene: 85860073

Centisome position: 71.72

GC content: 52.93

Gene sequence:

>1806_bases
ATGAATTACCGCAGGGAACACCGCAGCACTGACGCAGGCAATATGGCCCGTTATCTGGTTGTCTTTCTGATTCTCTGTCT
GACCGCCACAGCGGAAGGAAGGTCGTCTCTATCCCGATCCGGTTCCGCTGTGGCGCTCTCTTCCAATACCCTGCCGGATG
CCTACGCGGGAAACGGAAATCATGGCGCCGGTCCTCCGGTGAACAATATGGGTTCGCCGGGGGTAACCATTGATTTCGAT
AATGTGGAGATTCAGACCTTCATCAAGGCCATCGGTGAAATGACCGGCAGAAATTTTCTCATAGACAAACAGGTCCAGGG
AAGCGTTACCGTCTTTTCACCGAAACAGATATCATCAGATGAAGCGTATCGTGTTTTTCAGTCCGTTCTCGAAATTCACG
GTTATACGACCGTTCCCTCAGGAGCCGTCATCAAGATCCTCCCCCGGAAGGATGCCCGGGAAAAGGATATCCCCACTTTT
CTGCAGGATGAAGAAGGAGGACGGGAGGATCAACTGATCACCCGCATTGTCAAGCTGAAGCATGGCAATCCCGAAGATCT
CAAAAAAGTTATCGATCCCCTCGTGACAAGGGACAGTATCGTGCATGCCTATCCCCCTTCCGGCATGCTGGTCATAACGG
ACGTGGAATCCAACGTGCAGCGGCTTCTGAAGATCATCACCGCGCTGGACAGCGAGCTGGAGAAGAACGCCATCGTCATG
CACGTTTACCCTCTGCAGAATGCCAGCGCGGAGGATCTGGCCAAGGTTCTGATCAATCTTCAACCCAAGGAAACCGCTCC
AGGAAGCGAAAAAGGCCAACCGGCCCTTTCCAGAAATGTTCAGATCCAGTCGGACAAGGCAACCAATTCCCTGATCATCA
CCGCCTCCGCGGAAGATTACGCACTGCTTCAGGGACTCATTCAAAAGCTGGATTCATCCCGACCGATGGTTTACATCGAA
GCCCTGATTCTTGAGGTCAATATCGTCAAGGACTTCAACCTCGGCACTGAATGGCGAGCCATGCACGACGCAGGCTCCGG
AGGCACAGGGTCGCTGTTATTCGGCTCGGGCGGTCTGGGTCCGCCCGCCGGGACGTATAATATCCTGCCCGATGTCACAA
CACCTGCCACTTATTCTTCAGGATTTACCTTCGGCATTCTGGGGACGGGAATTACCCTTGGGGGGATAACCTTTCAGGAC
ATCGGCGCCATGATCCAGGCCATCAAGAGCGATACGGATATTCATATCCTGTCCAAACCGCAGCTTCTGACCATGGACAA
CGAAGAGGCCCAGATTCATGTCGGCAAAAACGTTCCCTATGCAACCCGAAAGGAAACAACCACGACAAATCTTGATTACA
GCTCCTATGAATATCGGGATGTCGGCGTCAGCCTGAAGATCACGCCGCACATCAACAGTGAGGGATTCGTCCGCATGAAG
ATCAATCAGGAGGTCAGTCAGGTTACGGAAGATTCTCCTACCGGACTGCCCACAACCAACAAACGGGCCGTCAACACAAC
CGTGACCATCAAGGATTCGGAAACCGTGGTCATCGGCGGAATGATTGGAGACAGCACCCAGCTCGGCACCTACAAAGTGC
CTCTCCTGGGTGATATCCCCGTCCTCGGCTGGCTTTTCAAATCCCGATCCTCAAACCGGGAAAAAACGAACCTCTACGTC
TTTATAACGCCCCGCGTCATCCGCCAACATACAGATGCCAGCCGGATATCCAAGGAAAAAAGCGACCATCTGGAAAGGGA
GAAGAAAAATCTCTCCAACCCTGGTCAGAAGAAAGGAAACCACTGA

Upstream 100 bases:

>100_bases
CAAAGCATTATATGGTTGTTAAGTTCAAATAACTGCGATCTTTGTCAACTTGAAACAAAAACATAGGCAATAACACCCGG
CAGGTTCCAGAGAGGAACAT

Downstream 100 bases:

>100_bases
TATAAATGACGATTACCCCAGAACTTGCCACACCTCATTCCATGGATAATGAAGTCCATCTCAATCCGGAAGAAGAAAAA
ATTGTCACCCAGGCCCAGGC

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MNYRREHRSTDAGNMARYLVVFLILCLTATAEGRSSLSRSGSAVALSSNTLPDAYAGNGNHGAGPPVNNMGSPGVTIDFD
NVEIQTFIKAIGEMTGRNFLIDKQVQGSVTVFSPKQISSDEAYRVFQSVLEIHGYTTVPSGAVIKILPRKDAREKDIPTF
LQDEEGGREDQLITRIVKLKHGNPEDLKKVIDPLVTRDSIVHAYPPSGMLVITDVESNVQRLLKIITALDSELEKNAIVM
HVYPLQNASAEDLAKVLINLQPKETAPGSEKGQPALSRNVQIQSDKATNSLIITASAEDYALLQGLIQKLDSSRPMVYIE
ALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQD
IGAMIQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMK
INQEVSQVTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYV
FITPRVIRQHTDASRISKEKSDHLEREKKNLSNPGQKKGNH

Sequences:

>Translated_601_residues
MNYRREHRSTDAGNMARYLVVFLILCLTATAEGRSSLSRSGSAVALSSNTLPDAYAGNGNHGAGPPVNNMGSPGVTIDFD
NVEIQTFIKAIGEMTGRNFLIDKQVQGSVTVFSPKQISSDEAYRVFQSVLEIHGYTTVPSGAVIKILPRKDAREKDIPTF
LQDEEGGREDQLITRIVKLKHGNPEDLKKVIDPLVTRDSIVHAYPPSGMLVITDVESNVQRLLKIITALDSELEKNAIVM
HVYPLQNASAEDLAKVLINLQPKETAPGSEKGQPALSRNVQIQSDKATNSLIITASAEDYALLQGLIQKLDSSRPMVYIE
ALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQD
IGAMIQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMK
INQEVSQVTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYV
FITPRVIRQHTDASRISKEKSDHLEREKKNLSNPGQKKGNH
>Mature_601_residues
MNYRREHRSTDAGNMARYLVVFLILCLTATAEGRSSLSRSGSAVALSSNTLPDAYAGNGNHGAGPPVNNMGSPGVTIDFD
NVEIQTFIKAIGEMTGRNFLIDKQVQGSVTVFSPKQISSDEAYRVFQSVLEIHGYTTVPSGAVIKILPRKDAREKDIPTF
LQDEEGGREDQLITRIVKLKHGNPEDLKKVIDPLVTRDSIVHAYPPSGMLVITDVESNVQRLLKIITALDSELEKNAIVM
HVYPLQNASAEDLAKVLINLQPKETAPGSEKGQPALSRNVQIQSDKATNSLIITASAEDYALLQGLIQKLDSSRPMVYIE
ALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQD
IGAMIQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMK
INQEVSQVTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYV
FITPRVIRQHTDASRISKEKSDHLEREKKNLSNPGQKKGNH

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=602, Percent_Identity=28.7375415282392, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI1789793, Length=328, Percent_Identity=25.609756097561, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 65447; Mature: 65447

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRREHRSTDAGNMARYLVVFLILCLTATAEGRSSLSRSGSAVALSSNTLPDAYAGNGN
CCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCC
HGAGPPVNNMGSPGVTIDFDNVEIQTFIKAIGEMTGRNFLIDKQVQGSVTVFSPKQISSD
CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCCCH
EAYRVFQSVLEIHGYTTVPSGAVIKILPRKDAREKDIPTFLQDEEGGREDQLITRIVKLK
HHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHC
HGNPEDLKKVIDPLVTRDSIVHAYPPSGMLVITDVESNVQRLLKIITALDSELEKNAIVM
CCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE
HVYPLQNASAEDLAKVLINLQPKETAPGSEKGQPALSRNVQIQSDKATNSLIITASAEDY
EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCEEEEEECCCHH
ALLQGLIQKLDSSRPMVYIEALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLG
HHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCCEEEEECCCCC
PPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQDIGAMIQAIKSDTDIHILSKP
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCEEHHHHHHHHHHHCCCCCEEEECCC
QLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMK
EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCEEEEE
INQEVSQVTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIP
ECCHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEECCCCCCCH
VLGWLFKSRSSNREKTNLYVFITPRVIRQHTDASRISKEKSDHLEREKKNLSNPGQKKGN
HHHHHHHCCCCCCCCEEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
H
C
>Mature Secondary Structure
MNYRREHRSTDAGNMARYLVVFLILCLTATAEGRSSLSRSGSAVALSSNTLPDAYAGNGN
CCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCC
HGAGPPVNNMGSPGVTIDFDNVEIQTFIKAIGEMTGRNFLIDKQVQGSVTVFSPKQISSD
CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCCCH
EAYRVFQSVLEIHGYTTVPSGAVIKILPRKDAREKDIPTFLQDEEGGREDQLITRIVKLK
HHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHC
HGNPEDLKKVIDPLVTRDSIVHAYPPSGMLVITDVESNVQRLLKIITALDSELEKNAIVM
CCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEE
HVYPLQNASAEDLAKVLINLQPKETAPGSEKGQPALSRNVQIQSDKATNSLIITASAEDY
EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCEEEEEECCCHH
ALLQGLIQKLDSSRPMVYIEALILEVNIVKDFNLGTEWRAMHDAGSGGTGSLLFGSGGLG
HHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCCEEEEECCCCC
PPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQDIGAMIQAIKSDTDIHILSKP
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCEEHHHHHHHHHHHCCCCCEEEECCC
QLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVSLKITPHINSEGFVRMK
EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCEEEEE
INQEVSQVTEDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIGDSTQLGTYKVPLLGDIP
ECCHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEECCCCCCCH
VLGWLFKSRSSNREKTNLYVFITPRVIRQHTDASRISKEKSDHLEREKKNLSNPGQKKGN
HHHHHHHCCCCCCCCEEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]