Click here to switch to the map view.

The map label for this gene is yrbH [C]

Identifier: 85859856

GI number: 85859856

Start: 2089764

End: 2090774

Strand: Direct

Name: yrbH [C]

Synonym: SYN_00471

Alternate gene names: 85859856

Gene position: 2089764-2090774 (Clockwise)

Preceding gene: 85859854

Following gene: 85859857

Centisome position: 65.73

GC content: 53.51

Gene sequence:

>1011_bases
ATGACAAGGCAACAGAATATGCAAAAAGATCAGACGATTGTCCGGGCAGAAGAAGTTCTCAGAATTGAAGCGGAAAGCAT
CCTGCAGCTTATCGGCAGACTGGATGGAAATTTTTCCCGGGCAGTGGATATTATCTATCGTTCTCCAGGAAGGGTGATTG
TGACCGGAATCGGAAAATCCGGGTTGATCGGGAAAAAGATTGTCGCCACGATGACCAGCACCGGCACTCAGGCCCTTTTC
CTTCATCCCGTTGAAGGCCTTCACGGCGATCTCGGCATTGTAACCAAGGATGACGTGCTTCTGGCCATTTCCAACAGCGG
GGAAACCGAAGAAGTAAACCGTCTCATCAGCAGCGTGCAGAAAATCGGCACTCCTCTGATTTCTTTTACGGGCAACCCCT
CCTCAACGATGGCGCGAGCCAGCGATGCGGTGATCGACGTGGGCGTGGAACGGGAGGCATGCCCTTTCGGGCTGGCTCCC
ACCTCAAGCTCCACGGCCACACTGGCCATGGGTGACGCCCTGGCTGTCGCCCTGATCGACAAGCACAAATTCAGCGAAAA
GGATTTCTATAAATTCCATCCCGGGGGGAGCCTGGGACAGCGTTTGCGGGCAAAAGTCCGGGATGTCATGATCAGTGGTT
CGGATATGCCTCAGATCTATGCCGGGACATCGGCGATCGATGCCATCTCGGTTCTCGATGAGAAAAACAAGGGCTTTATT
CTGGTGACCGATGAACTCAACCGTCTCCAGGGCATCCTGACCGATGGCGATGTGCGTCGTCTCGTTCGAAAAGGCCTCGA
TATTTCAGAAAAACGGATTGACGATATCATGACCCGCTCGCCCAAGTCGATTCAAGACAGCTGGTCTCTTGCCCAGACAA
TCGAATTCATGCAGAAGGATGAAATCACCGCCCTTGCCGTTGTAAACGGCGGCAATCAGCTTCAGGGCTACATCCATCTG
CACGATATCCTCGGACGGGGCGGCACTGTCCGGATATCATTACCGCTATAG

Upstream 100 bases:

>100_bases
CGATGTAATCTTGGGAATCAGGGTGAAAATCATTCTTGTCACACCGGTTTTTTTTTGATAGCAAAGCGGCTGGTTTATAA
AAAACAAATATAGTAACTTA

Downstream 100 bases:

>100_bases
ATATAAGCGGATATATCCTTGAAATACCTGTGCTTTAATAATCGGGGATAAATCCGCGATGAAATTTTATCATCATGATC
TCATCTTTAAAAAAATGCAT

Product: arabinose-5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTRQQNMQKDQTIVRAEEVLRIEAESILQLIGRLDGNFSRAVDIIYRSPGRVIVTGIGKSGLIGKKIVATMTSTGTQALF
LHPVEGLHGDLGIVTKDDVLLAISNSGETEEVNRLISSVQKIGTPLISFTGNPSSTMARASDAVIDVGVEREACPFGLAP
TSSSTATLAMGDALAVALIDKHKFSEKDFYKFHPGGSLGQRLRAKVRDVMISGSDMPQIYAGTSAIDAISVLDEKNKGFI
LVTDELNRLQGILTDGDVRRLVRKGLDISEKRIDDIMTRSPKSIQDSWSLAQTIEFMQKDEITALAVVNGGNQLQGYIHL
HDILGRGGTVRISLPL

Sequences:

>Translated_336_residues
MTRQQNMQKDQTIVRAEEVLRIEAESILQLIGRLDGNFSRAVDIIYRSPGRVIVTGIGKSGLIGKKIVATMTSTGTQALF
LHPVEGLHGDLGIVTKDDVLLAISNSGETEEVNRLISSVQKIGTPLISFTGNPSSTMARASDAVIDVGVEREACPFGLAP
TSSSTATLAMGDALAVALIDKHKFSEKDFYKFHPGGSLGQRLRAKVRDVMISGSDMPQIYAGTSAIDAISVLDEKNKGFI
LVTDELNRLQGILTDGDVRRLVRKGLDISEKRIDDIMTRSPKSIQDSWSLAQTIEFMQKDEITALAVVNGGNQLQGYIHL
HDILGRGGTVRISLPL
>Mature_335_residues
TRQQNMQKDQTIVRAEEVLRIEAESILQLIGRLDGNFSRAVDIIYRSPGRVIVTGIGKSGLIGKKIVATMTSTGTQALFL
HPVEGLHGDLGIVTKDDVLLAISNSGETEEVNRLISSVQKIGTPLISFTGNPSSTMARASDAVIDVGVEREACPFGLAPT
SSSTATLAMGDALAVALIDKHKFSEKDFYKFHPGGSLGQRLRAKVRDVMISGSDMPQIYAGTSAIDAISVLDEKNKGFIL
VTDELNRLQGILTDGDVRRLVRKGLDISEKRIDDIMTRSPKSIQDSWSLAQTIEFMQKDEITALAVVNGGNQLQGYIHLH
DILGRGGTVRISLPL

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=314, Percent_Identity=44.2675159235669, Blast_Score=274, Evalue=5e-75,
Organism=Escherichia coli, GI87082151, Length=310, Percent_Identity=41.6129032258065, Blast_Score=238, Evalue=4e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 36353; Mature: 36222

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQQNMQKDQTIVRAEEVLRIEAESILQLIGRLDGNFSRAVDIIYRSPGRVIVTGIGKS
CCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCEEEEECCCC
GLIGKKIVATMTSTGTQALFLHPVEGLHGDLGIVTKDDVLLAISNSGETEEVNRLISSVQ
CCCHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHH
KIGTPLISFTGNPSSTMARASDAVIDVGVEREACPFGLAPTSSSTATLAMGDALAVALID
HHCCCEEEECCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEH
KHKFSEKDFYKFHPGGSLGQRLRAKVRDVMISGSDMPQIYAGTSAIDAISVLDEKNKGFI
HHCCCCCCCEEECCCCHHHHHHHHHHHHHEECCCCCCEEEECCHHHHHHHHHCCCCCCEE
LVTDELNRLQGILTDGDVRRLVRKGLDISEKRIDDIMTRSPKSIQDSWSLAQTIEFMQKD
EEECCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
EITALAVVNGGNQLQGYIHLHDILGRGGTVRISLPL
CEEEEEEEECCCEEEEEEEEEHHHCCCCEEEEEECC
>Mature Secondary Structure 
TRQQNMQKDQTIVRAEEVLRIEAESILQLIGRLDGNFSRAVDIIYRSPGRVIVTGIGKS
CCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCEEEEECCCC
GLIGKKIVATMTSTGTQALFLHPVEGLHGDLGIVTKDDVLLAISNSGETEEVNRLISSVQ
CCCHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHH
KIGTPLISFTGNPSSTMARASDAVIDVGVEREACPFGLAPTSSSTATLAMGDALAVALID
HHCCCEEEECCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEH
KHKFSEKDFYKFHPGGSLGQRLRAKVRDVMISGSDMPQIYAGTSAIDAISVLDEKNKGFI
HHCCCCCCCEEECCCCHHHHHHHHHHHHHEECCCCCCEEEECCHHHHHHHHHCCCCCCEE
LVTDELNRLQGILTDGDVRRLVRKGLDISEKRIDDIMTRSPKSIQDSWSLAQTIEFMQKD
EEECCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
EITALAVVNGGNQLQGYIHLHDILGRGGTVRISLPL
CEEEEEEEECCCEEEEEEEEEHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]