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The map label for this gene is ymdB [C]

Identifier: 85859817

GI number: 85859817

Start: 2056264

End: 2056908

Strand: Direct

Name: ymdB [C]

Synonym: SYN_01003

Alternate gene names: 85859817

Gene position: 2056264-2056908 (Clockwise)

Preceding gene: 85859816

Following gene: 85859827

Centisome position: 64.68

GC content: 57.36

Gene sequence:

>645_bases
ATGATATGCTGGTTTTTGGGAGGGGAACACCGGTATCCTGTCAACTTTGATAACAGAATAAGTCGGCTGCCTGCCGAAAC
ACCGACAGGGAGGAAGAAAATGGAGGCTCGGATTGGGAACAGCGTTCTGGCCCTGATTCAGGGGGATATAACCCAGGAAG
ATACCGACGCCATCGTCAATGCCGCCAATACGGGTCTGCGTGGAGGCGGCGGAGTGGACGGCGCCATTCACCGGGCCGGA
GGGCCGTCCATCATGGCCGAATGCCGCCGGATCGGAGGCTGTCCCACAGGTCAGGCGGTGATCACCACAGGCGGCAAGAT
GAAGGCCCGTTACGTAATTCACACCGTCGGTCCGGTTTATCGGGACGGTTCCCACGGGGAGGCGGAGCTTCTGGCCAGCG
CCTACCGGGAAAGCCTGAAAATGGCTTCGGCCCGACATCTGAAGAGCCTGTCCTTCCCCGCCATCAGTGCCGGGGTTTAC
GGATATCCCCTGGAGGAGGCCGCCCGGATCGCCCTGCAGACGGTCATCGATTATCTGAAAAAAAACAGGGATATAGAACT
GGTCCGGTTTGTCCTATTCAACCAGAGCACCTACGATGCCTTTTCCAATGCTCTTGGAAAACTTTTACCCGGGGAATCGA
AGTAA

Upstream 100 bases:

>100_bases
AGCAAGGCAGCGGAAATTCAAAAAGGCAGGGTGGTTTCGGTCATAGGCCGATACTGGTCCATGGACCGGGAAGAAAACTG
GGACCGCATCAAAAAAACTT

Downstream 100 bases:

>100_bases
TCCGCGATCCCAGCCACCCGACTGACATACGTGGACAAAACCATCACCGCCCCCTGTCTTAACGTTCCTGTTTTGTCGTT
ACCTCGGCCTTGATCCGGTT

Product: appr-1-p histone processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MICWFLGGEHRYPVNFDNRISRLPAETPTGRKKMEARIGNSVLALIQGDITQEDTDAIVNAANTGLRGGGGVDGAIHRAG
GPSIMAECRRIGGCPTGQAVITTGGKMKARYVIHTVGPVYRDGSHGEAELLASAYRESLKMASARHLKSLSFPAISAGVY
GYPLEEAARIALQTVIDYLKKNRDIELVRFVLFNQSTYDAFSNALGKLLPGESK

Sequences:

>Translated_214_residues
MICWFLGGEHRYPVNFDNRISRLPAETPTGRKKMEARIGNSVLALIQGDITQEDTDAIVNAANTGLRGGGGVDGAIHRAG
GPSIMAECRRIGGCPTGQAVITTGGKMKARYVIHTVGPVYRDGSHGEAELLASAYRESLKMASARHLKSLSFPAISAGVY
GYPLEEAARIALQTVIDYLKKNRDIELVRFVLFNQSTYDAFSNALGKLLPGESK
>Mature_214_residues
MICWFLGGEHRYPVNFDNRISRLPAETPTGRKKMEARIGNSVLALIQGDITQEDTDAIVNAANTGLRGGGGVDGAIHRAG
GPSIMAECRRIGGCPTGQAVITTGGKMKARYVIHTVGPVYRDGSHGEAELLASAYRESLKMASARHLKSLSFPAISAGVY
GYPLEEAARIALQTVIDYLKKNRDIELVRFVLFNQSTYDAFSNALGKLLPGESK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=46.7836257309941, Blast_Score=163, Evalue=1e-40,
Organism=Homo sapiens, GI13569840, Length=173, Percent_Identity=44.5086705202312, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI207450721, Length=175, Percent_Identity=36, Blast_Score=100, Evalue=7e-22,
Organism=Homo sapiens, GI8923143, Length=175, Percent_Identity=36, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI154813199, Length=179, Percent_Identity=31.8435754189944, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI20336746, Length=172, Percent_Identity=30.8139534883721, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371710, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371706, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371716, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371714, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371712, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371718, Length=152, Percent_Identity=30.9210526315789, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI165377137, Length=175, Percent_Identity=26.8571428571429, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI93141018, Length=175, Percent_Identity=27.4285714285714, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI93141020, Length=175, Percent_Identity=27.4285714285714, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4758496, Length=175, Percent_Identity=27.4285714285714, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=167, Percent_Identity=47.3053892215569, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=175, Percent_Identity=45.1428571428571, Blast_Score=134, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24586353, Length=144, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 23067; Mature: 23067

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICWFLGGEHRYPVNFDNRISRLPAETPTGRKKMEARIGNSVLALIQGDITQEDTDAIVN
CEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCHHEEEEECCCCCCHHHHHHH
AANTGLRGGGGVDGAIHRAGGPSIMAECRRIGGCPTGQAVITTGGKMKARYVIHTVGPVY
HHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEECCCCE
RDGSHGEAELLASAYRESLKMASARHLKSLSFPAISAGVYGYPLEEAARIALQTVIDYLK
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
KNRDIELVRFVLFNQSTYDAFSNALGKLLPGESK
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MICWFLGGEHRYPVNFDNRISRLPAETPTGRKKMEARIGNSVLALIQGDITQEDTDAIVN
CEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCHHEEEEECCCCCCHHHHHHH
AANTGLRGGGGVDGAIHRAGGPSIMAECRRIGGCPTGQAVITTGGKMKARYVIHTVGPVY
HHCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEECCCCE
RDGSHGEAELLASAYRESLKMASARHLKSLSFPAISAGVYGYPLEEAARIALQTVIDYLK
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
KNRDIELVRFVLFNQSTYDAFSNALGKLLPGESK
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]