| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is dnaC [H]
Identifier: 85859724
GI number: 85859724
Start: 1952057
End: 1953421
Strand: Direct
Name: dnaC [H]
Synonym: SYN_00640
Alternate gene names: 85859724
Gene position: 1952057-1953421 (Clockwise)
Preceding gene: 85859723
Following gene: 85859726
Centisome position: 61.4
GC content: 52.31
Gene sequence:
>1365_bases ATGAAAGTCAACGACATTGACGTTTCTCTCCACCGAATTCCGCCTCAGAACCGGGAAGCTGAGCAGTCCATCCTGGGTGG AATCCTGCTGGATAATGAGTCGTTGCACAGTGTCCTGGAAATTCTGCAGATCCCCGATTTTTACAGCGAGGCTCATCGGC GGATTTTTTCCGCGATCCTTGATCTCTACGATCGAAATGAACCCTGCGACCTCATAACTTTAAGCAATATCCTCAATGAT AAAAGTCAGCTGGACAACGTGGGAGGCATGGCTTATCTTGCCTCCCTCGTGGACAATGTTCCTTCCTCGGCAAACATTAC TTACTACGCGAAGATCGTTAAGGAAAAATCCGTCCTTCGGTCGCTGATCGGCACCGCGACGGAAATCCTGAGCAGGAGCT ACGATCCGGTCAATGACGTCGAGGAGGTTCTTGATCAGGCCGAACAGGCCATTTTTGAAATTTCCCAGCACAAAATCAAA CCGGCCTTCTCGCCCATGCGGGAAATCATCAAGGACAGCTTCAAGACCATAGAACAGCTCTATGAACGCAAGTCCATGAT TACAGGAGTTCCCACTGGTTTTGAAAGGATAGACGATCTGACTTCAGGTTTGCAGAATTCGGATCTGATTATTATTGCCG GACGGCCCAGCATGGGAAAGACCGCCTTTGCCCTCAACATCGCCTCCTTTGTCGCTCTGGAGGCAGCGATTCCGGTCGCC ATCTTTTCCCTGGAAATGTCCAAGGAACAGCTTGCTCTCCGTATGCTGGCATCCGAAGCCAAGGTGGATTCGCAGCGCCT GCGGAAGGGTTTTCTCGGTGAAACGGACTGGCCGAAGCTGACGAATGCCGCCGGGAGACTAGCCGATGCGGCGATTTTCA TCGACGATACGCCTGCGATCACCGTTCTGGAAATGAAGGCCAAGGCAAGGCGACTCAAGGCGGAATCGGGACTAGGTCTG GTCCTGCTGGATTACCTTCAACTGATGCGCAGCGGGAATACAAAAGAATCCCGCGAACAGGAAATTTCGGAAATCAGCCG TTCTTTGAAAGCGCTGGCTAAGGAACTGAGCATTCCGGTTGTGGCCCTTTCCCAGCTCAACCGCAAGGTTGAGGACCGCT CCGACCGCCGTCCACAGATGGCGGACCTCCGCGAATCGGGAGCCATTGAACAGGACGCGGACGTCATCGCGTTTATTTAT CGTGACGAGGTTTATAACAAGTCGGATGACAATCCGGAAAAGGGTATTGCGGAAATCATCATCGGCAAGCAGCGAAACGG CCCGACAGGCACCGTCAAACTGGCGTTCATGGAAAAATATACGAGTTTCGAAAATCTTGCCCGGCCTGAGGACATGGCCT CTTAA
Upstream 100 bases:
>100_bases GAATTCCCCATCGTGATCAAACTGGGCGCCGGCGTAACGGCGGAAATCAAAGTCAACGTGGTTCCGGAACAGGCATAGGC ACTGCGTAAAGGCTGAAAAA
Downstream 100 bases:
>100_bases TTACTCCCAGCCTCCAGCAGTTTCTGCTCCTCTCCCAGATAAGGCAGGGCAAGACGCAGTTTCTTCAAGGCCTGCTTTTC AATCTGCCTGGCGCGTTCGC
Product: replicative DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MKVNDIDVSLHRIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAILDLYDRNEPCDLITLSNILND KSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLRSLIGTATEILSRSYDPVNDVEEVLDQAEQAIFEISQHKIK PAFSPMREIIKDSFKTIEQLYERKSMITGVPTGFERIDDLTSGLQNSDLIIIAGRPSMGKTAFALNIASFVALEAAIPVA IFSLEMSKEQLALRMLASEAKVDSQRLRKGFLGETDWPKLTNAAGRLADAAIFIDDTPAITVLEMKAKARRLKAESGLGL VLLDYLQLMRSGNTKESREQEISEISRSLKALAKELSIPVVALSQLNRKVEDRSDRRPQMADLRESGAIEQDADVIAFIY RDEVYNKSDDNPEKGIAEIIIGKQRNGPTGTVKLAFMEKYTSFENLARPEDMAS
Sequences:
>Translated_454_residues MKVNDIDVSLHRIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAILDLYDRNEPCDLITLSNILND KSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLRSLIGTATEILSRSYDPVNDVEEVLDQAEQAIFEISQHKIK PAFSPMREIIKDSFKTIEQLYERKSMITGVPTGFERIDDLTSGLQNSDLIIIAGRPSMGKTAFALNIASFVALEAAIPVA IFSLEMSKEQLALRMLASEAKVDSQRLRKGFLGETDWPKLTNAAGRLADAAIFIDDTPAITVLEMKAKARRLKAESGLGL VLLDYLQLMRSGNTKESREQEISEISRSLKALAKELSIPVVALSQLNRKVEDRSDRRPQMADLRESGAIEQDADVIAFIY RDEVYNKSDDNPEKGIAEIIIGKQRNGPTGTVKLAFMEKYTSFENLARPEDMAS >Mature_454_residues MKVNDIDVSLHRIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAILDLYDRNEPCDLITLSNILND KSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLRSLIGTATEILSRSYDPVNDVEEVLDQAEQAIFEISQHKIK PAFSPMREIIKDSFKTIEQLYERKSMITGVPTGFERIDDLTSGLQNSDLIIIAGRPSMGKTAFALNIASFVALEAAIPVA IFSLEMSKEQLALRMLASEAKVDSQRLRKGFLGETDWPKLTNAAGRLADAAIFIDDTPAITVLEMKAKARRLKAESGLGL VLLDYLQLMRSGNTKESREQEISEISRSLKALAKELSIPVVALSQLNRKVEDRSDRRPQMADLRESGAIEQDADVIAFIY RDEVYNKSDDNPEKGIAEIIIGKQRNGPTGTVKLAFMEKYTSFENLARPEDMAS
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=452, Percent_Identity=48.8938053097345, Blast_Score=419, Evalue=1e-118,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 50524; Mature: 50524
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVNDIDVSLHRIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAIL CCCCCEEEEEECCCCCCCHHHHHHHCCCEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHH DLYDRNEPCDLITLSNILNDKSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLR HHHCCCCCCCEEEHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH SLIGTATEILSRSYDPVNDVEEVLDQAEQAIFEISQHKIKPAFSPMREIIKDSFKTIEQL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH YERKSMITGVPTGFERIDDLTSGLQNSDLIIIAGRPSMGKTAFALNIASFVALEAAIPVA HHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH IFSLEMSKEQLALRMLASEAKVDSQRLRKGFLGETDWPKLTNAAGRLADAAIFIDDTPAI HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCE TVLEMKAKARRLKAESGLGLVLLDYLQLMRSGNTKESREQEISEISRSLKALAKELSIPV EEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH VALSQLNRKVEDRSDRRPQMADLRESGAIEQDADVIAFIYRDEVYNKSDDNPEKGIAEII HHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHH IGKQRNGPTGTVKLAFMEKYTSFENLARPEDMAS CCCCCCCCCCEEEEHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure MKVNDIDVSLHRIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAIL CCCCCEEEEEECCCCCCCHHHHHHHCCCEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHH DLYDRNEPCDLITLSNILNDKSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLR HHHCCCCCCCEEEHHHHHCCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH SLIGTATEILSRSYDPVNDVEEVLDQAEQAIFEISQHKIKPAFSPMREIIKDSFKTIEQL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH YERKSMITGVPTGFERIDDLTSGLQNSDLIIIAGRPSMGKTAFALNIASFVALEAAIPVA HHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH IFSLEMSKEQLALRMLASEAKVDSQRLRKGFLGETDWPKLTNAAGRLADAAIFIDDTPAI HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCE TVLEMKAKARRLKAESGLGLVLLDYLQLMRSGNTKESREQEISEISRSLKALAKELSIPV EEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH VALSQLNRKVEDRSDRRPQMADLRESGAIEQDADVIAFIYRDEVYNKSDDNPEKGIAEII HHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHH IGKQRNGPTGTVKLAFMEKYTSFENLARPEDMAS CCCCCCCCCCEEEEHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]