Click here to switch to the map view.

The map label for this gene is yafJ [C]

Identifier: 85859686

GI number: 85859686

Start: 1914628

End: 1915323

Strand: Direct

Name: yafJ [C]

Synonym: SYN_01087

Alternate gene names: 85859686

Gene position: 1914628-1915323 (Clockwise)

Preceding gene: 85859685

Following gene: 85859691

Centisome position: 60.22

GC content: 48.71

Gene sequence:

>696_bases
ATGTGCCGGCTTCTTGGCATCACGAATTTCGAATTTTCAAAGCATCAGCAGATCGTCCTGAACTTCTGCGAACTCGCCCG
CAGCGGCATGGTCATGAAAGGTGATCCTCCCGGACATGCAGACGGATGGGGGGTGGCATTTTATCAAAACGGGGAACTGG
AAGTTTATAAAAGCGGCGGCAACCTCCTCGAAGAGACAGATCAAGCCCTGGAACTTCTCAGCAAAACCCGCGAGTGCCCG
GTTGTGATCCTTCATCTGCGCAAATCCGCCTGGAAAAACACCACTTCGTTCCGGCACGCCCATCCCTTCCGATACGGAAA
TGTCGCTTTTGCCCATAACGGCACGGTCTACGATTATAAAGAACTGATTCCAGACATCACGCCTTCCGTTCTTCGCAAAG
ACGCTCTTGATACGGAAGTTTTTTTCCATCATTTCATGAGGAATCCCTCTCCTGAACTGGGGAAGGCCTTTCTCCATACC
GTGTCTTTGATCAAAAGCCTCTGTCGCTATTCTGCACTCAACTGTCTTTTCAGCGACGGGCTCAAACTGTTCGCTTACCG
GGATTATTCCAGGGAACCGGCCTACTATTCCCTTTTTAAAGCATTCTCCGGGAACTCATGTTTTATTTCTTCCCAGACTC
TTGATAAAATCACCTGTTGGGAGTTGATGAAAAAGGAAGAGTTTCTTGTGGTATAA

Upstream 100 bases:

>100_bases
GTCAGCATCAGCAGAACGCGCTATCTTGTGCCCGTCTGTCTGGCTGCCGATTTCATCGGAATCATTGTCTCCATCATCGT
TGTGAGGTTGTTTTTTTAAC

Downstream 100 bases:

>100_bases
CTGTACGGAACGGAGAATGAACGGCGAATCCCGTTGCTGAAAAGGGCATGATGAAGAGATTCCTCTTTTTTATGTCGTCA
GAGCTTTCGCTCTTTCCTGA

Product: glutamine amidotransferases class-II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MCRLLGITNFEFSKHQQIVLNFCELARSGMVMKGDPPGHADGWGVAFYQNGELEVYKSGGNLLEETDQALELLSKTRECP
VVILHLRKSAWKNTTSFRHAHPFRYGNVAFAHNGTVYDYKELIPDITPSVLRKDALDTEVFFHHFMRNPSPELGKAFLHT
VSLIKSLCRYSALNCLFSDGLKLFAYRDYSREPAYYSLFKAFSGNSCFISSQTLDKITCWELMKKEEFLVV

Sequences:

>Translated_231_residues
MCRLLGITNFEFSKHQQIVLNFCELARSGMVMKGDPPGHADGWGVAFYQNGELEVYKSGGNLLEETDQALELLSKTRECP
VVILHLRKSAWKNTTSFRHAHPFRYGNVAFAHNGTVYDYKELIPDITPSVLRKDALDTEVFFHHFMRNPSPELGKAFLHT
VSLIKSLCRYSALNCLFSDGLKLFAYRDYSREPAYYSLFKAFSGNSCFISSQTLDKITCWELMKKEEFLVV
>Mature_231_residues
MCRLLGITNFEFSKHQQIVLNFCELARSGMVMKGDPPGHADGWGVAFYQNGELEVYKSGGNLLEETDQALELLSKTRECP
VVILHLRKSAWKNTTSFRHAHPFRYGNVAFAHNGTVYDYKELIPDITPSVLRKDALDTEVFFHHFMRNPSPELGKAFLHT
VSLIKSLCRYSALNCLFSDGLKLFAYRDYSREPAYYSLFKAFSGNSCFISSQTLDKITCWELMKKEEFLVV

Specific function: Unknown

COG id: COG0121

COG function: function code R; Predicted glutamine amidotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005854
- InterPro:   IPR000583
- InterPro:   IPR017932
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00310 GATase_2 [H]

EC number: NA

Molecular weight: Translated: 26430; Mature: 26430

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRLLGITNFEFSKHQQIVLNFCELARSGMVMKGDPPGHADGWGVAFYQNGELEVYKSGG
CEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCEEEEECCC
NLLEETDQALELLSKTRECPVVILHLRKSAWKNTTSFRHAHPFRYGNVAFAHNGTVYDYK
CHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEHH
ELIPDITPSVLRKDALDTEVFFHHFMRNPSPELGKAFLHTVSLIKSLCRYSALNCLFSDG
HHCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LKLFAYRDYSREPAYYSLFKAFSGNSCFISSQTLDKITCWELMKKEEFLVV
CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MCRLLGITNFEFSKHQQIVLNFCELARSGMVMKGDPPGHADGWGVAFYQNGELEVYKSGG
CEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCEEEEECCC
NLLEETDQALELLSKTRECPVVILHLRKSAWKNTTSFRHAHPFRYGNVAFAHNGTVYDYK
CHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEHH
ELIPDITPSVLRKDALDTEVFFHHFMRNPSPELGKAFLHTVSLIKSLCRYSALNCLFSDG
HHCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LKLFAYRDYSREPAYYSLFKAFSGNSCFISSQTLDKITCWELMKKEEFLVV
CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]