| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is ybbP [H]
Identifier: 85859671
GI number: 85859671
Start: 1902243
End: 1903742
Strand: Direct
Name: ybbP [H]
Synonym: SYN_02762
Alternate gene names: 85859671
Gene position: 1902243-1903742 (Clockwise)
Preceding gene: 85859655
Following gene: 85859672
Centisome position: 59.83
GC content: 52.33
Gene sequence:
>1500_bases ATGCTGACACGCCTCTGGCCGATACTGAAAAGCTTTCAGATTCAGGATATTCTTGACATCGCCATTATCACTGTCATGAT TTCAGCACTACTGATCTGGTTTAAGGACAGGGCATCCCGATTTGTTCTTTTCGGCATCGGTGTTCTGGGTCTTATCTATA TCCTGGCCCGTTTCTTCCAGCTCTATCTGACAACCCTCGTATTGCAGGGCTTTTTTGCCATTTTTCTTTTCGTAATCGTC GTCATCTTTCAGGAAGATCTTCGACGGTTTTTCGAAAGACTCGCCCTCTGGGGGCGCTTCAAAATCAGCCTGCGCGACGT GGCTTCTTCCCATTCCAGTGCGGAGATCATCGCCCATACCGCCGCAAATCTTGCCCGGCAGCGCATCGGCGCCCTGATGG TCATTGCGGGCAACGAACCTCTGGACCGACATCTGACCGGGGGAGTCCGACTGGATGGCCTTCTCAGCGAACCCCTCCTT GAAAGCATTTTTGACCCTCATTCCAAGGGTCATGACGGCGCAATAGTCATTCGGGACGACCGTATTGAACTGTTTGGCTG TCATCTTCCGTTGACCAGCAACATCCCTCCCCACAGTCGCTATGGCTTGCGTCATACTGCCGCCCTCGGCCTGTCCGAAA GATCCGACGCCCTCTGCATCGTTGTTTCAGAAGAGAGAGGCACTCTATCCCTCGCACAGGGTGAGCAGTTGAATCAGGTT GAAAACGCGTCCGAACTGAGGAGCGCCCTGGAAGACTTTTATGCCCGTAATGCCCCTCCACGACCACAACATCCCGTTCT TGCCTGGCTGAAGGAAAATCCCAAGGAAAAAGTCATTGCCTTTGTTCTTGCCATCATTCTCTGGCTTACGTTCGGTTATC AGAGGGACTCGGTCCGAAGGGATTTTACCGCTCCCATTGAATACGTCAATCTCGCTCCCGACTGGGTGCTGGAAGGCACC AGGAACACCGACGCCGTAGTCACTCTTACCGGATCATCCCAAGCTTTCAGGCTCTTGAATCCGGAAAGGCTCAAGGTTTC CATTGATCTCGCAAAAACTCAACCCGGGAAGCAGGAAATCTCATTGACCGGAGACCTGGTCACAGTTCCTCCAGGCCTGA CTGTAGTCGGAATCAAACCGGAACGCATAACGATCACGGCGTCGCGATTTACCGCCGTGACTGCTTCCATTGAAGCGGTT GTCAAGCTGCCTTCCAACGACTGGATCGTGCAGAGGACCACTCTTATACCGTCTTCCGTCAGAATTCTCATACCCTACAG AGAGCGATCCAGGCATTTCCAGCTGAAAACGGAACCCATTTCCCTGCATCCCACAACAGATGCTCAGACCCACACCGCCA TTCTGATTATGCCAGCGGAAGTTCGTCTCGAAGGCGGTAAAATACCTGAGGTCACAGTCAACGTAAAACTGAAAAAAAGG ATCAGCACACATCCTTCACAAGCCCCAAGACCTTCCACGGAGATGACGGAAGATGGTTAG
Upstream 100 bases:
>100_bases ATGTTCTTGACAGGGTTCGGGGGCTGCACATATAAGATAATCATGGATGTAAAATCAGGCCGACAGATTCCATAATCTTC AAGGTGCAGAGAAGGACATT
Downstream 100 bases:
>100_bases ACCCGGGAAAACCCGATCGGGGAAAGTGGGCCTGCCGCCTGGTTCCCTCGTTCATATCGGGGAAAAAACTGCGGAAAAGA CGAAAATCTCACTGATTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR ISTHPSQAPRPSTEMTEDG
Sequences:
>Translated_499_residues MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR ISTHPSQAPRPSTEMTEDG >Mature_499_residues MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR ISTHPSQAPRPSTEMTEDG
Specific function: Unknown
COG id: COG1624
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014046 - InterPro: IPR003390 [H]
Pfam domain/function: PF02457 DisA_N [H]
EC number: NA
Molecular weight: Translated: 55765; Mature: 55765
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQ CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH LYLTTLVLQGFFAIFLFVIVVIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCCHHHHHHH AANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLLESIFDPHSKGHDGAIVIRDD HHHHHHHHHCEEEEEECCCCHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC RIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEECCCCHHHHH ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRR CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC DFTAPIEYVNLAPDWVLEGTRNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEI CCCCCCCEEECCCCCEEECCCCCCEEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCEE SLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAVVKLPSNDWIVQRTTLIPSSV EEECCEEECCCCEEEEEECCCEEEEEEHHHEEHHEEEEEEEECCCCCEEEEEEEECCCCE RILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR EEEEEECCCCCEEEEECCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEH ISTHPSQAPRPSTEMTEDG HCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQ CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH LYLTTLVLQGFFAIFLFVIVVIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCCHHHHHHH AANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLLESIFDPHSKGHDGAIVIRDD HHHHHHHHHCEEEEEECCCCHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC RIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEECCCCHHHHH ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRR CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC DFTAPIEYVNLAPDWVLEGTRNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEI CCCCCCCEEECCCCCEEECCCCCCEEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCEE SLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAVVKLPSNDWIVQRTTLIPSSV EEECCEEECCCCEEEEEECCCEEEEEEHHHEEHHEEEEEEEECCCCCEEEEEEEECCCCE RILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR EEEEEECCCCCEEEEECCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEH ISTHPSQAPRPSTEMTEDG HCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9274029; 9384377 [H]