Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

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The map label for this gene is ybbP [H]

Identifier: 85859671

GI number: 85859671

Start: 1902243

End: 1903742

Strand: Direct

Name: ybbP [H]

Synonym: SYN_02762

Alternate gene names: 85859671

Gene position: 1902243-1903742 (Clockwise)

Preceding gene: 85859655

Following gene: 85859672

Centisome position: 59.83

GC content: 52.33

Gene sequence:

>1500_bases
ATGCTGACACGCCTCTGGCCGATACTGAAAAGCTTTCAGATTCAGGATATTCTTGACATCGCCATTATCACTGTCATGAT
TTCAGCACTACTGATCTGGTTTAAGGACAGGGCATCCCGATTTGTTCTTTTCGGCATCGGTGTTCTGGGTCTTATCTATA
TCCTGGCCCGTTTCTTCCAGCTCTATCTGACAACCCTCGTATTGCAGGGCTTTTTTGCCATTTTTCTTTTCGTAATCGTC
GTCATCTTTCAGGAAGATCTTCGACGGTTTTTCGAAAGACTCGCCCTCTGGGGGCGCTTCAAAATCAGCCTGCGCGACGT
GGCTTCTTCCCATTCCAGTGCGGAGATCATCGCCCATACCGCCGCAAATCTTGCCCGGCAGCGCATCGGCGCCCTGATGG
TCATTGCGGGCAACGAACCTCTGGACCGACATCTGACCGGGGGAGTCCGACTGGATGGCCTTCTCAGCGAACCCCTCCTT
GAAAGCATTTTTGACCCTCATTCCAAGGGTCATGACGGCGCAATAGTCATTCGGGACGACCGTATTGAACTGTTTGGCTG
TCATCTTCCGTTGACCAGCAACATCCCTCCCCACAGTCGCTATGGCTTGCGTCATACTGCCGCCCTCGGCCTGTCCGAAA
GATCCGACGCCCTCTGCATCGTTGTTTCAGAAGAGAGAGGCACTCTATCCCTCGCACAGGGTGAGCAGTTGAATCAGGTT
GAAAACGCGTCCGAACTGAGGAGCGCCCTGGAAGACTTTTATGCCCGTAATGCCCCTCCACGACCACAACATCCCGTTCT
TGCCTGGCTGAAGGAAAATCCCAAGGAAAAAGTCATTGCCTTTGTTCTTGCCATCATTCTCTGGCTTACGTTCGGTTATC
AGAGGGACTCGGTCCGAAGGGATTTTACCGCTCCCATTGAATACGTCAATCTCGCTCCCGACTGGGTGCTGGAAGGCACC
AGGAACACCGACGCCGTAGTCACTCTTACCGGATCATCCCAAGCTTTCAGGCTCTTGAATCCGGAAAGGCTCAAGGTTTC
CATTGATCTCGCAAAAACTCAACCCGGGAAGCAGGAAATCTCATTGACCGGAGACCTGGTCACAGTTCCTCCAGGCCTGA
CTGTAGTCGGAATCAAACCGGAACGCATAACGATCACGGCGTCGCGATTTACCGCCGTGACTGCTTCCATTGAAGCGGTT
GTCAAGCTGCCTTCCAACGACTGGATCGTGCAGAGGACCACTCTTATACCGTCTTCCGTCAGAATTCTCATACCCTACAG
AGAGCGATCCAGGCATTTCCAGCTGAAAACGGAACCCATTTCCCTGCATCCCACAACAGATGCTCAGACCCACACCGCCA
TTCTGATTATGCCAGCGGAAGTTCGTCTCGAAGGCGGTAAAATACCTGAGGTCACAGTCAACGTAAAACTGAAAAAAAGG
ATCAGCACACATCCTTCACAAGCCCCAAGACCTTCCACGGAGATGACGGAAGATGGTTAG

Upstream 100 bases:

>100_bases
ATGTTCTTGACAGGGTTCGGGGGCTGCACATATAAGATAATCATGGATGTAAAATCAGGCCGACAGATTCCATAATCTTC
AAGGTGCAGAGAAGGACATT

Downstream 100 bases:

>100_bases
ACCCGGGAAAACCCGATCGGGGAAAGTGGGCCTGCCGCCTGGTTCCCTCGTTCATATCGGGGAAAAAACTGCGGAAAAGA
CGAAAATCTCACTGATTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV
VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL
ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV
ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT
RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV
VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR
ISTHPSQAPRPSTEMTEDG

Sequences:

>Translated_499_residues
MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV
VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL
ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV
ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT
RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV
VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR
ISTHPSQAPRPSTEMTEDG
>Mature_499_residues
MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQLYLTTLVLQGFFAIFLFVIV
VIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHTAANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLL
ESIFDPHSKGHDGAIVIRDDRIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV
ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRRDFTAPIEYVNLAPDWVLEGT
RNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEISLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAV
VKLPSNDWIVQRTTLIPSSVRILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR
ISTHPSQAPRPSTEMTEDG

Specific function: Unknown

COG id: COG1624

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014046
- InterPro:   IPR003390 [H]

Pfam domain/function: PF02457 DisA_N [H]

EC number: NA

Molecular weight: Translated: 55765; Mature: 55765

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQ
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH
LYLTTLVLQGFFAIFLFVIVVIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCCHHHHHHH
AANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLLESIFDPHSKGHDGAIVIRDD
HHHHHHHHHCEEEEEECCCCHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC
RIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV
CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEECCCCHHHHH
ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRR
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DFTAPIEYVNLAPDWVLEGTRNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEI
CCCCCCCEEECCCCCEEECCCCCCEEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCEE
SLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAVVKLPSNDWIVQRTTLIPSSV
EEECCEEECCCCEEEEEECCCEEEEEEHHHEEHHEEEEEEEECCCCCEEEEEEEECCCCE
RILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR
EEEEEECCCCCEEEEECCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEH
ISTHPSQAPRPSTEMTEDG
HCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTRLWPILKSFQIQDILDIAIITVMISALLIWFKDRASRFVLFGIGVLGLIYILARFFQ
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH
LYLTTLVLQGFFAIFLFVIVVIFQEDLRRFFERLALWGRFKISLRDVASSHSSAEIIAHT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCCHHHHHHH
AANLARQRIGALMVIAGNEPLDRHLTGGVRLDGLLSEPLLESIFDPHSKGHDGAIVIRDD
HHHHHHHHHCEEEEEECCCCHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC
RIELFGCHLPLTSNIPPHSRYGLRHTAALGLSERSDALCIVVSEERGTLSLAQGEQLNQV
CEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCEEEECCCCHHHHH
ENASELRSALEDFYARNAPPRPQHPVLAWLKENPKEKVIAFVLAIILWLTFGYQRDSVRR
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DFTAPIEYVNLAPDWVLEGTRNTDAVVTLTGSSQAFRLLNPERLKVSIDLAKTQPGKQEI
CCCCCCCEEECCCCCEEECCCCCCEEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCEE
SLTGDLVTVPPGLTVVGIKPERITITASRFTAVTASIEAVVKLPSNDWIVQRTTLIPSSV
EEECCEEECCCCEEEEEECCCEEEEEEHHHEEHHEEEEEEEECCCCCEEEEEEEECCCCE
RILIPYRERSRHFQLKTEPISLHPTTDAQTHTAILIMPAEVRLEGGKIPEVTVNVKLKKR
EEEEEECCCCCEEEEECCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEH
ISTHPSQAPRPSTEMTEDG
HCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]