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The map label for this gene is xseB

Identifier: 85859629

GI number: 85859629

Start: 1858566

End: 1858805

Strand: Direct

Name: xseB

Synonym: SYN_02458

Alternate gene names: 85859629

Gene position: 1858566-1858805 (Clockwise)

Preceding gene: 85859628

Following gene: 85859630

Centisome position: 58.46

GC content: 48.33

Gene sequence:

>240_bases
ATGGCAAAAGAAAAATTTGAAGAAGCAATGGCCAAACTGGAAGCCCTGGTCCGAAAAATGGAAACAGGTGATATGACCCT
TGAAGAATCCCTGAAGGCCTTCGAAGAAGGCATCAGACTTTCACGGCTGTGTGCGTCCCGCCTGGATGATGCCGAACGGC
GCGTGGAGATGTTGATTGCTGAAAATTCGAATGTGACGGTGCAGCCCTTACGGGAAAATGGAGAGAAAAATGAATCCTGA

Upstream 100 bases:

>100_bases
GATGTCGCCATGCTGAAAATCGGCGATTCCCTGGAGCTTCGGGTGCGAAAGGGCCGCCTTGAGGCAGAGGTCACGAGGAT
TATTCCGGAGTAAAGGACTT

Downstream 100 bases:

>100_bases
ATCCGGGCTGGATCTGAATGCCTACATCAAGGAAAAAAAGCTGCGGATCGATGAAGCCATCGACCGCTACCTGCCCGGCG
AGGAGGAATCCCCGGGTGAA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MAKEKFEEAMAKLEALVRKMETGDMTLEESLKAFEEGIRLSRLCASRLDDAERRVEMLIAENSNVTVQPLRENGEKNES

Sequences:

>Translated_79_residues
MAKEKFEEAMAKLEALVRKMETGDMTLEESLKAFEEGIRLSRLCASRLDDAERRVEMLIAENSNVTVQPLRENGEKNES
>Mature_78_residues
AKEKFEEAMAKLEALVRKMETGDMTLEESLKAFEEGIRLSRLCASRLDDAERRVEMLIAENSNVTVQPLRENGEKNES

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=74, Percent_Identity=37.8378378378378, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_SYNAS (Q2LUA0)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_461831.1
- ProteinModelPortal:   Q2LUA0
- SMR:   Q2LUA0
- STRING:   Q2LUA0
- GeneID:   3883716
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_02458
- NMPDR:   fig|56780.10.peg.1769
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   APLNDYK
- PhylomeDB:   Q2LUA0
- BioCyc:   SACI56780:SYN_02458-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9017; Mature: 8886

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEKFEEAMAKLEALVRKMETGDMTLEESLKAFEEGIRLSRLCASRLDDAERRVEMLIA
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
ENSNVTVQPLRENGEKNES
CCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
AKEKFEEAMAKLEALVRKMETGDMTLEESLKAFEEGIRLSRLCASRLDDAERRVEMLIA
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
ENSNVTVQPLRENGEKNES
CCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA