| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is xseA [H]
Identifier: 85859628
GI number: 85859628
Start: 1857158
End: 1858558
Strand: Direct
Name: xseA [H]
Synonym: SYN_02459
Alternate gene names: 85859628
Gene position: 1857158-1858558 (Clockwise)
Preceding gene: 85859626
Following gene: 85859629
Centisome position: 58.41
GC content: 56.39
Gene sequence:
>1401_bases TTGTCACAAAGAATAATATCTGATAGGTGCACTGCGATGAAGGGAAGTATAACGGAAATATTAACCGTTTCGGAACTGAA TGAAAAAATCCGGGATCTTCTGGAAGCCCGGTTTGATCTGCTCTGGGTGGAGGGGGAAGTGTCCAATTTGCGCCGCCCCT CCTCGGGACATATCTATTTTACGCTCAAGGATGAAAAAAGTCAGATTCGGGCAGTCATATTCCGGTTTTTACCCGGATCG AGGCCCTTCCGGAACAATCGTCTCCCTTTTTTCGACCTTGAGGAAGGCATGCAGATCACCTGTCGAGCCAGACTGGCCGT CTACGCGCCGAGAGGAGAGTACCAGCTGATTCTTGACTCGCTGGAACCCCGGGGAACCGGCGCTCTTCAGAAGGCGTATG AACAGTTGAAAGCCCGCCTGCAGGCCGAGGGACTTTTTGATGCCTCCCGGAAAAAACCGATTCCCTACCTTCCCCGGCGA ATCGGCGTGATCACCTCCCCCACGGGAGCCGTCATCCGCGACATCCTGAACATCACGGCAAGACGCTTTCCCTCCGTTTC TCTCGTGATCGCTCCCGTCCGCGTTCAGGGACCGGAAGCACCCAGGGAGATCGTTCAAGCCATTCAGGATCTGCATTCCC TTGAAGAAGTCGATGTCCTCATTCTGGCTCGCGGGGGAGGATCGCTCGAAGATCTATCCGCTTTCAATGATGAAAGCGTC GCCCGTGCCATCGCCTCGTCATCTCTTCCGGTTATCTCCGCAGTCGGCCATGAGACGGACTTCACTATCGCCGACTTTGC AGCGGATGTCCGTGCGCCTACGCCATCCACTGCCGCGGAACTGGCCGTGCCCAACAGGAACGATCTGACCGCCTGGCTTG CAGGAACCCGGTCAAGACTTTACACACTCTTAATCCGGAGCATGACACAAAGGCGGGAGCAGCTGGTCCGATGCCGGGAA CGGTTAAAGGACCCACAGCGCGTCATCACAGGTTTGCGTCTCGCCCTGGACGACCACAGGGAACGCGGCCGGCTTATCAT TCAACAGCGGCTGTCAGCGGAAAAGCAGAATATTCTGCTTCAGCGCCTGCGTCTTCAGCAGGCAGGCCCCCTCCGCAGAA TAAGGGACACCCGTTTGAACGTTGAGGATATGGAAAAGCGGCTCATTTCCTCCTGCCGGCTTAATCTGGACCGGGCGAGA AAAAGCTGGACCGTTTCGGCGACACGCGTGGACTCCCTGAGTCCCCTTGCCGTTCTGGAGCGGGGGTACAGCATTGCCAG GACATTGCCGGGAGGTAGAATTATAAGGGATGTCGCCATGCTGAAAATCGGCGATTCCCTGGAGCTTCGGGTGCGAAAGG GCCGCCTTGAGGCAGAGGTCACGAGGATTATTCCGGAGTAA
Upstream 100 bases:
>100_bases CCTGTCCATTCAGGAACTCGAGCCCGTCCGGCGATAACTTTTGTTCTTAAATCATGGCCGGTTAAAAGTCAACTTCAGAA GAATCTTAAAAAAATCATAC
Downstream 100 bases:
>100_bases AGGACTTATGGCAAAAGAAAAATTTGAAGAAGCAATGGCCAAACTGGAAGCCCTGGTCCGAAAAATGGAAACAGGTGATA TGACCCTTGAAGAATCCCTG
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MSQRIISDRCTAMKGSITEILTVSELNEKIRDLLEARFDLLWVEGEVSNLRRPSSGHIYFTLKDEKSQIRAVIFRFLPGS RPFRNNRLPFFDLEEGMQITCRARLAVYAPRGEYQLILDSLEPRGTGALQKAYEQLKARLQAEGLFDASRKKPIPYLPRR IGVITSPTGAVIRDILNITARRFPSVSLVIAPVRVQGPEAPREIVQAIQDLHSLEEVDVLILARGGGSLEDLSAFNDESV ARAIASSSLPVISAVGHETDFTIADFAADVRAPTPSTAAELAVPNRNDLTAWLAGTRSRLYTLLIRSMTQRREQLVRCRE RLKDPQRVITGLRLALDDHRERGRLIIQQRLSAEKQNILLQRLRLQQAGPLRRIRDTRLNVEDMEKRLISSCRLNLDRAR KSWTVSATRVDSLSPLAVLERGYSIARTLPGGRIIRDVAMLKIGDSLELRVRKGRLEAEVTRIIPE
Sequences:
>Translated_466_residues MSQRIISDRCTAMKGSITEILTVSELNEKIRDLLEARFDLLWVEGEVSNLRRPSSGHIYFTLKDEKSQIRAVIFRFLPGS RPFRNNRLPFFDLEEGMQITCRARLAVYAPRGEYQLILDSLEPRGTGALQKAYEQLKARLQAEGLFDASRKKPIPYLPRR IGVITSPTGAVIRDILNITARRFPSVSLVIAPVRVQGPEAPREIVQAIQDLHSLEEVDVLILARGGGSLEDLSAFNDESV ARAIASSSLPVISAVGHETDFTIADFAADVRAPTPSTAAELAVPNRNDLTAWLAGTRSRLYTLLIRSMTQRREQLVRCRE RLKDPQRVITGLRLALDDHRERGRLIIQQRLSAEKQNILLQRLRLQQAGPLRRIRDTRLNVEDMEKRLISSCRLNLDRAR KSWTVSATRVDSLSPLAVLERGYSIARTLPGGRIIRDVAMLKIGDSLELRVRKGRLEAEVTRIIPE >Mature_465_residues SQRIISDRCTAMKGSITEILTVSELNEKIRDLLEARFDLLWVEGEVSNLRRPSSGHIYFTLKDEKSQIRAVIFRFLPGSR PFRNNRLPFFDLEEGMQITCRARLAVYAPRGEYQLILDSLEPRGTGALQKAYEQLKARLQAEGLFDASRKKPIPYLPRRI GVITSPTGAVIRDILNITARRFPSVSLVIAPVRVQGPEAPREIVQAIQDLHSLEEVDVLILARGGGSLEDLSAFNDESVA RAIASSSLPVISAVGHETDFTIADFAADVRAPTPSTAAELAVPNRNDLTAWLAGTRSRLYTLLIRSMTQRREQLVRCRER LKDPQRVITGLRLALDDHRERGRLIIQQRLSAEKQNILLQRLRLQQAGPLRRIRDTRLNVEDMEKRLISSCRLNLDRARK SWTVSATRVDSLSPLAVLERGYSIARTLPGGRIIRDVAMLKIGDSLELRVRKGRLEAEVTRIIPE
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=448, Percent_Identity=42.6339285714286, Blast_Score=352, Evalue=4e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 52570; Mature: 52438
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRIISDRCTAMKGSITEILTVSELNEKIRDLLEARFDLLWVEGEVSNLRRPSSGHIYF CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCEEEE TLKDEKSQIRAVIFRFLPGSRPFRNNRLPFFDLEEGMQITCRARLAVYAPRGEYQLILDS EECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCEEEEEC LEPRGTGALQKAYEQLKARLQAEGLFDASRKKPIPYLPRRIGVITSPTGAVIRDILNITA CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCEEECCHHHHHHHHHHHHH RRFPSVSLVIAPVRVQGPEAPREIVQAIQDLHSLEEVDVLILARGGGSLEDLSAFNDESV HHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCHHHH ARAIASSSLPVISAVGHETDFTIADFAADVRAPTPSTAAELAVPNRNDLTAWLAGTRSRL HHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHEECCCCCCCHHHHHHHHHHH YTLLIRSMTQRREQLVRCRERLKDPQRVITGLRLALDDHRERGRLIIQQRLSAEKQNILL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLRLQQAGPLRRIRDTRLNVEDMEKRLISSCRLNLDRARKSWTVSATRVDSLSPLAVLE HHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEHHCCCCCHHHHHH RGYSIARTLPGGRIIRDVAMLKIGDSLELRVRKGRLEAEVTRIIPE CCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCC >Mature Secondary Structure SQRIISDRCTAMKGSITEILTVSELNEKIRDLLEARFDLLWVEGEVSNLRRPSSGHIYF CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCEEEE TLKDEKSQIRAVIFRFLPGSRPFRNNRLPFFDLEEGMQITCRARLAVYAPRGEYQLILDS EECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCEEEEEC LEPRGTGALQKAYEQLKARLQAEGLFDASRKKPIPYLPRRIGVITSPTGAVIRDILNITA CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCEEECCHHHHHHHHHHHHH RRFPSVSLVIAPVRVQGPEAPREIVQAIQDLHSLEEVDVLILARGGGSLEDLSAFNDESV HHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCHHHH ARAIASSSLPVISAVGHETDFTIADFAADVRAPTPSTAAELAVPNRNDLTAWLAGTRSRL HHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHEECCCCCCCHHHHHHHHHHH YTLLIRSMTQRREQLVRCRERLKDPQRVITGLRLALDDHRERGRLIIQQRLSAEKQNILL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLRLQQAGPLRRIRDTRLNVEDMEKRLISSCRLNLDRARKSWTVSATRVDSLSPLAVLE HHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCEEEEEHHCCCCCHHHHHH RGYSIARTLPGGRIIRDVAMLKIGDSLELRVRKGRLEAEVTRIIPE CCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA