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The map label for this gene is traH [H]

Identifier: 85859532

GI number: 85859532

Start: 1757139

End: 1758605

Strand: Direct

Name: traH [H]

Synonym: SYN_01874

Alternate gene names: 85859532

Gene position: 1757139-1758605 (Clockwise)

Preceding gene: 85859531

Following gene: 85859533

Centisome position: 55.27

GC content: 60.46

Gene sequence:

>1467_bases
GTGGCTATGAATAAAGGAATTATTCTCAAAAGCATCGTGGTCCTTGTAATTATTGCTCTCCTCCTGTCGCCCCTTGGCCC
GGACGGGCCTATGGCTGGCTGGGTTGACGACTGGCTCCAGCAGAAAACGGAGACCTCCCCTGGGTACTTCGAGGGGCAGA
AAAGGGGTTATTTCACCGGCGGGAGCTTCTCGGCGAGGTGGCAGCAGGGAAACGACTACCTCTTCACCGCCATGCCACCC
AAGGTGAAGGCGGGCTGCGGCGGGATCGACGTCTTCCTGGGCGGGTTCTCCTATCTGAATTTCGAATACCTGGTAACCAA
GCTCCAGCGGATCATGCAGGCCGCACCGGCGGCGGCCTTCGACATCGCTTTGAACGTTCTCTGCGAGCCCTGCTCGAAGA
CGATCAAGTCCCTGGAAGCTATCACCAACACCCTGAACAACCTGCAGCTCGATGAGTGCAAGGCGGGCCGGGCGCTCGTG
GCGACCATGGTGCCCCCGTCCCTCGCCGAAACGAAGGACAAACAGGCAAAGCTCGCCGGAATCCAGGGGGACTTCCTCCA
GTCATCGGGCGTTAACGACCTCTGGAAGAGCATCAACGACCAGACAAGCGCAAACGCGAACAAGCCGGTCACGAACATGA
AGCAGGCACTCGCGGGCTGTCCCCAGGACATCCGGGACGTCTTCGGGACCAGCGGGTCGGTCATCAACAACATCGCAGCC
AAGACCGGCTTCAACAACCAGTCCTACCTCGACATGCTGAGAGGGTTCGTCGGTGACGTATACATCATCGACGCCGGGGA
CGCGGGTTTCCAGGTGGGTCACACGCCCCCCTGCGATCAAAACCGGTACGCCTCCTTCGACAACCTCTTGGACGGAAGCG
TCTACGCCCGGACGGCAGGAGGCGCCTGCGCACAAATTACCGACAGCTCGGCCGACCTCACGAATTACGTGCGGACGAAG
ATGACCCGGATCGCGGGAAAGATCAAGGCGAAGCAGGCCCTCTCGGACGAGGACAACGCCTTCGTGAACGCTAGTCCCCT
TTCCATCGGGCTCGTTCTCAAGGCGGCCGTGGGAACGAACCAGGAGTCATCCATCATCAGTACCCTCTCCGACGTGACCG
CCAAGGCCTACGCCTTCCAGCTCCTCTCGGACCTCTACACGAAGGTCTGGAACATCATGGAAAAGGCGAGGAGCCTCGCC
CAGGCTCAGCCGGGGGCCGTGCAGGGCGCGCAGGAATACCAGTGCAAGATCGAGATGCTCTCCGGTGCGATCGACGGCAC
GGCGGAGATGCAGGCCAGAATCGTGGAAATGGTAAGCGGAGTCCGGAGATCCTACGCCGCATCCGTCCAGGAGGTGATGG
GGGTCTACAACCTGGTGGACAAGATGGAGAAATTCGACAGGCTGGCCCTGAGCATGCTGAGTTCGAAATTCGGAACGGCC
GTCGCGGCCAGGTCATTGTCACGCTGA

Upstream 100 bases:

>100_bases
GAGATCACCCCGGAGGAGTATTCTCTCTACGAGTTCCAGCGGGGCGGCGCCTTCGATGTGAAGGCTCCCTTGAGGCGGGA
CAAAAGATAAAAGCGAAGGT

Downstream 100 bases:

>100_bases
ACGCTCGGAAAGAAATCTAATGGGAATTTTTGGAAAGACAATTCTTATATTTGGCTTCACGGTCGTCATGTTGTCAGCTG
CACCGGACGCCCATGCAGTG

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MAMNKGIILKSIVVLVIIALLLSPLGPDGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTGGSFSARWQQGNDYLFTAMPP
KVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAFDIALNVLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALV
ATMVPPSLAETKDKQAKLAGIQGDFLQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAA
KTGFNNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDGSVYARTAGGACAQITDSSADLTNYVRTK
MTRIAGKIKAKQALSDEDNAFVNASPLSIGLVLKAAVGTNQESSIISTLSDVTAKAYAFQLLSDLYTKVWNIMEKARSLA
QAQPGAVQGAQEYQCKIEMLSGAIDGTAEMQARIVEMVSGVRRSYAASVQEVMGVYNLVDKMEKFDRLALSMLSSKFGTA
VAARSLSR

Sequences:

>Translated_488_residues
MAMNKGIILKSIVVLVIIALLLSPLGPDGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTGGSFSARWQQGNDYLFTAMPP
KVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAFDIALNVLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALV
ATMVPPSLAETKDKQAKLAGIQGDFLQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAA
KTGFNNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDGSVYARTAGGACAQITDSSADLTNYVRTK
MTRIAGKIKAKQALSDEDNAFVNASPLSIGLVLKAAVGTNQESSIISTLSDVTAKAYAFQLLSDLYTKVWNIMEKARSLA
QAQPGAVQGAQEYQCKIEMLSGAIDGTAEMQARIVEMVSGVRRSYAASVQEVMGVYNLVDKMEKFDRLALSMLSSKFGTA
VAARSLSR
>Mature_487_residues
AMNKGIILKSIVVLVIIALLLSPLGPDGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTGGSFSARWQQGNDYLFTAMPPK
VKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAFDIALNVLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALVA
TMVPPSLAETKDKQAKLAGIQGDFLQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAAK
TGFNNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDGSVYARTAGGACAQITDSSADLTNYVRTKM
TRIAGKIKAKQALSDEDNAFVNASPLSIGLVLKAAVGTNQESSIISTLSDVTAKAYAFQLLSDLYTKVWNIMEKARSLAQ
AQPGAVQGAQEYQCKIEMLSGAIDGTAEMQARIVEMVSGVRRSYAASVQEVMGVYNLVDKMEKFDRLALSMLSSKFGTAV
AARSLSR

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 52397; Mature: 52266

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNKGIILKSIVVLVIIALLLSPLGPDGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTG
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECC
GSFSARWQQGNDYLFTAMPPKVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAF
CCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
DIALNVLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALVATMVPPSLAETKDKQAKLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCHHHHCCHHHHHHCC
IQGDFLQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAA
CCCHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH
KTGFNNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDGSVYARTAG
HCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCC
GACAQITDSSADLTNYVRTKMTRIAGKIKAKQALSDEDNAFVNASPLSIGLVLKAAVGTN
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCC
QESSIISTLSDVTAKAYAFQLLSDLYTKVWNIMEKARSLAQAQPGAVQGAQEYQCKIEML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SGAIDGTAEMQARIVEMVSGVRRSYAASVQEVMGVYNLVDKMEKFDRLALSMLSSKFGTA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAARSLSR
HHHHHCCC
>Mature Secondary Structure 
AMNKGIILKSIVVLVIIALLLSPLGPDGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTG
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECC
GSFSARWQQGNDYLFTAMPPKVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAF
CCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHH
DIALNVLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALVATMVPPSLAETKDKQAKLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCHHHHCCHHHHHHCC
IQGDFLQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAA
CCCHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH
KTGFNNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDGSVYARTAG
HCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCC
GACAQITDSSADLTNYVRTKMTRIAGKIKAKQALSDEDNAFVNASPLSIGLVLKAAVGTN
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCC
QESSIISTLSDVTAKAYAFQLLSDLYTKVWNIMEKARSLAQAQPGAVQGAQEYQCKIEML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SGAIDGTAEMQARIVEMVSGVRRSYAASVQEVMGVYNLVDKMEKFDRLALSMLSSKFGTA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAARSLSR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]