| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yggV [C]
Identifier: 85859451
GI number: 85859451
Start: 1657296
End: 1657820
Strand: Direct
Name: yggV [C]
Synonym: SYN_00901
Alternate gene names: 85859451
Gene position: 1657296-1657820 (Clockwise)
Preceding gene: 85859450
Following gene: 85859452
Centisome position: 52.13
GC content: 46.48
Gene sequence:
>525_bases TTGGCAGAGTATGACCATGTCCCAGAGGTCATTGAGGATGGGTCTTCTTTTTTTGAAAATGCTCTGAAGAAAGCAAAAAC GATTTCCGAATTTACGGGTGAAACAGCACTGGCTGACGATTCCGGTCTGGAAATCGCTGCCTTGAATGGTCAACCTGGAA TTTACTCCTCCCGTTTTGCCGGTGAAGATGCCGACGATGATCGTAACATTGATAAAGTTTTGGATTTATTGGCAAATACT CCCTTGAAGAATAGGACCGCAGCTTTCCGGTGCTCGATAGTTTTGTATTCTCCTGAAGGAAGCTATGAAGCTTTTGAGGG TCGATGGGACGGTCTGATCAGCGAAGCCCGCCAGGGAAGCGGCGGATTCGGTTACGATCCGATATTTTATGTCCCGGAAT TCAAAAAAACCGTAGCACAGTTGACGTCACAGGAAAAGAATCGCTTGAGTCACCGGGCAAAAGCCCTTTTCGCACTGAAG GAGAGCTTGCGGACTCGATTGGAACTGAATAAAAGAAGTTTGTAA
Upstream 100 bases:
>100_bases GACAGATCTGAGAAAAAAAGTCGTTTTCGCATCCCGCAATGAAGGAAAGATCGGGGAAGTACGTGCAATCCTTGAAGGTC TTGATATCGATCTGGTTTCA
Downstream 100 bases:
>100_bases ATCATCCGGGGCGTAGCGCAGCCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCCGCCCCGA CCAGTAAAAAAGAAAGGGCT
Product: xanthosine triphosphate pyrophosphatase
Products: NA
Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase [H]
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANT PLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALK ESLRTRLELNKRSL
Sequences:
>Translated_174_residues MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANT PLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALK ESLRTRLELNKRSL >Mature_173_residues AEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANTP LKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKE SLRTRLELNKRSL
Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions [H]
COG id: COG0127
COG function: function code F; Xanthosine triphosphate pyrophosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAM1 NTPase family [H]
Homologues:
Organism=Escherichia coli, GI1789324, Length=155, Percent_Identity=44.5161290322581, Blast_Score=142, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002637 - InterPro: IPR020922 [H]
Pfam domain/function: PF01725 Ham1p_like [H]
EC number: =3.6.1.15 [H]
Molecular weight: Translated: 19306; Mature: 19174
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFA CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC GEDADDDRNIDKVLDLLANTPLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGS CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC GGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKESLRTRLELNKRSL CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFA CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC GEDADDDRNIDKVLDLLANTPLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGS CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC GGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKESLRTRLELNKRSL CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA