Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is yggV [C]

Identifier: 85859451

GI number: 85859451

Start: 1657296

End: 1657820

Strand: Direct

Name: yggV [C]

Synonym: SYN_00901

Alternate gene names: 85859451

Gene position: 1657296-1657820 (Clockwise)

Preceding gene: 85859450

Following gene: 85859452

Centisome position: 52.13

GC content: 46.48

Gene sequence:

>525_bases
TTGGCAGAGTATGACCATGTCCCAGAGGTCATTGAGGATGGGTCTTCTTTTTTTGAAAATGCTCTGAAGAAAGCAAAAAC
GATTTCCGAATTTACGGGTGAAACAGCACTGGCTGACGATTCCGGTCTGGAAATCGCTGCCTTGAATGGTCAACCTGGAA
TTTACTCCTCCCGTTTTGCCGGTGAAGATGCCGACGATGATCGTAACATTGATAAAGTTTTGGATTTATTGGCAAATACT
CCCTTGAAGAATAGGACCGCAGCTTTCCGGTGCTCGATAGTTTTGTATTCTCCTGAAGGAAGCTATGAAGCTTTTGAGGG
TCGATGGGACGGTCTGATCAGCGAAGCCCGCCAGGGAAGCGGCGGATTCGGTTACGATCCGATATTTTATGTCCCGGAAT
TCAAAAAAACCGTAGCACAGTTGACGTCACAGGAAAAGAATCGCTTGAGTCACCGGGCAAAAGCCCTTTTCGCACTGAAG
GAGAGCTTGCGGACTCGATTGGAACTGAATAAAAGAAGTTTGTAA

Upstream 100 bases:

>100_bases
GACAGATCTGAGAAAAAAAGTCGTTTTCGCATCCCGCAATGAAGGAAAGATCGGGGAAGTACGTGCAATCCTTGAAGGTC
TTGATATCGATCTGGTTTCA

Downstream 100 bases:

>100_bases
ATCATCCGGGGCGTAGCGCAGCCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCCGCCCCGA
CCAGTAAAAAAGAAAGGGCT

Product: xanthosine triphosphate pyrophosphatase

Products: NA

Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase [H]

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANT
PLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALK
ESLRTRLELNKRSL

Sequences:

>Translated_174_residues
MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANT
PLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALK
ESLRTRLELNKRSL
>Mature_173_residues
AEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFAGEDADDDRNIDKVLDLLANTP
LKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGSGGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKE
SLRTRLELNKRSL

Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions [H]

COG id: COG0127

COG function: function code F; Xanthosine triphosphate pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAM1 NTPase family [H]

Homologues:

Organism=Escherichia coli, GI1789324, Length=155, Percent_Identity=44.5161290322581, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002637
- InterPro:   IPR020922 [H]

Pfam domain/function: PF01725 Ham1p_like [H]

EC number: =3.6.1.15 [H]

Molecular weight: Translated: 19306; Mature: 19174

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFA
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC
GEDADDDRNIDKVLDLLANTPLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGS
CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
GGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKESLRTRLELNKRSL
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEYDHVPEVIEDGSSFFENALKKAKTISEFTGETALADDSGLEIAALNGQPGIYSSRFA
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC
GEDADDDRNIDKVLDLLANTPLKNRTAAFRCSIVLYSPEGSYEAFEGRWDGLISEARQGS
CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
GGFGYDPIFYVPEFKKTVAQLTSQEKNRLSHRAKALFALKESLRTRLELNKRSL
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA