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The map label for this gene is nrdD [H]

Identifier: 85859088

GI number: 85859088

Start: 1263798

End: 1265945

Strand: Direct

Name: nrdD [H]

Synonym: SYN_03522

Alternate gene names: 85859088

Gene position: 1263798-1265945 (Clockwise)

Preceding gene: 85859087

Following gene: 85859089

Centisome position: 39.75

GC content: 46.18

Gene sequence:

>2148_bases
TTGCGATGTGCAATATGCAAAGGTTCTCGGCACAGATTGTATAGAGGTGCTCTAATGTATACGGAAATTAAAAAAAGAGA
TGGAAGACTGGTCAAGTTCGATGCCGAAAAAATAACCCGTGCCATTGCCAAAGCAGGTGACGCCACAGGGGAATTCGATT
ACAAGGTAGCTCGGAAATTGACAATCAAGGTCATGAGTCTTGCCGAAAAAATCTTTGACAGCCGCATCATATCAGTTGAA
GAAATTCAGGATATTGTAGAAGAAGTTCTTCTTTCAACATACAGCCGCACAGCGAAAGCCTACATCATTTATCGTGATCA
ACATGCCCGGTTGAGAGAAATCACGAACCGGATGGAAGTGGATCTGGTTGACCAGTATCTCAAGAAGAAGGACTGGAAGA
TCAATGAGAACAGTAATATGGATTATTCCCTTCAGGGGCTGAACAATTATATTTCGTCTGAGGTCAGTAAAATATACTGG
CTTAACGAGGTTTATTCTCCGGAAGTCCGCAAGGCGCATAATGAAGGTGAGTTTCATATTCATGATTTGAGCCTTCTTTC
CGTATACTGTGTAGGCTGGGACCTTCTGGACCTTCTGATGACCGGTTTCAAGGGGGTTTCGGGGAAGGTGGAAAGCAAGC
CGGCAAAGCATTTGAGAAGCGCTTTGGGGCAGGTCGTCAATTTTTTCTATACCCTTCAGGGGGAAGCAGCCGGAGCTCAG
GCTTTTTCAAATTTTGATACGCTCCTCGCCCCGTTTATCCGTTACGATGGCTTGACCTTCGATGAAGTCAAACAGGCCCT
GCAGGAATTTATCTTCAATATCAACGTGCCTACAAGAGTCGGATTTCAGACGCCTTTTACCAATGTCACCTTGGATGTTA
CCGTTCCCCGGTATTACGCCGGTCAGAATGTGATCATCGGAGGAGAACCCCAGGAGGAAACATATTCTGAATTTCAGGAA
GAAATGAATGTGTTCAACAAGGCGTTTCTGCAGGTCATGGCTGAAGGGGATGCCAAAGGAAGGGTGTTCACTTTTCCGAT
TCCCACGTATAACATTACCAGAGATTTCAACTGGGATGATCCCAATCTGAAAGACCTCTGGGAAATGACCGCCAAATACG
GTGTTCCATATTTTTCAAATTTCATCAACTCCGATATGAATCCTGAAGACGCGAGAAGCATGTGCTGCCGTTTGCGGATC
GACAATCGCCAGTTGCAGGTCCGCGGCGGCGGCCTTTTTGGGTCCAATCCGCTGACAGGATCCATAGGGGTCATTACCAT
CAATATGCCCCGCATCGGTTATCTTTCTAAAACAGAGGGTGAATTTCTGGACCGTCTGAACAGGTTGATGATTTTGGCCA
GGGAAAGTCTTGAAACCAAAAGAAAAGTTCTGGAAAAATTCACAGACCGCAATCTCTATCCCTATACCAAATACTATCTG
AGAAACGTGAAAGAGCGCTTTGGCGAATATTGGAAAAATCACTTTTCCACCATTGGCCTGGTTGGCATGAATGAGGCCTG
TCTCAATCTCTTAGGAAAGAATATCGCGTCGGAAGAGGGACAGGCTTTTACTAAGAATGTCCTTGATTTTATGCGGGACA
GGCTTGTCGAATTTCAGGAGGAGACGGGAAATAATTACAATCTGGAGTCCACGCCGGCTGAAGGGACTTCTTACAGGCTG
GCCCAGATTGACAGGAAAAAATACGCTGACATTCGACTGGCCACCGACGAGCAGGAATTAATCGAAGGAGTGGAATCTTT
TTATACCAATTCGACCCAACTCCCGGTTAATTATACGGACGATGTCTTCGAGGCCCTTGAACTTCAGGATGAGATCCAGT
CCAAGTATACCGGCGGTACGGTTTTTCACACGTATGCCGGGGAAAGAATTGAAGATCCGGAGGCTGTGAAAAAACTGGTT
CGTAAAATCTGTTCAAATTATCATTTGCCGTATCTGACTTTTACTCCTACATTCAGCGTCTGTCCTTCTCATGGATACAT
TTCCGGTGAGCAGGCGACCTGTCCGGAGTGCAATGAGCCCTGTGAGATCTATTCACGCGTGGTAGGCTATCTTCGCCCGA
TCGGGCAGTGGAACAAGGGAAAACGACAGGAATTTTCGATGCGGAGGGTTTACAGATTTCAGGCATGA

Upstream 100 bases:

>100_bases
AAATGACTTCCCCCCCCTGTTTGAGCATTCTTTCATTTTTATTTGCTTCTTGATCAATATGTAGTAGTATATCCCATAGC
CGAGCCCAATATATTGTGAT

Downstream 100 bases:

>100_bases
AAATCGGAGGCTTACAGAGGGTGTCGTTCATCGATTATCCCGGGGAGATCTGTGCCGTTGTGTTCTGTCAAGGCTGCAAT
TTCAGATGCTCCTATTGCCA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MRCAICKGSRHRLYRGALMYTEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKLTIKVMSLAEKIFDSRIISVE
EIQDIVEEVLLSTYSRTAKAYIIYRDQHARLREITNRMEVDLVDQYLKKKDWKINENSNMDYSLQGLNNYISSEVSKIYW
LNEVYSPEVRKAHNEGEFHIHDLSLLSVYCVGWDLLDLLMTGFKGVSGKVESKPAKHLRSALGQVVNFFYTLQGEAAGAQ
AFSNFDTLLAPFIRYDGLTFDEVKQALQEFIFNINVPTRVGFQTPFTNVTLDVTVPRYYAGQNVIIGGEPQEETYSEFQE
EMNVFNKAFLQVMAEGDAKGRVFTFPIPTYNITRDFNWDDPNLKDLWEMTAKYGVPYFSNFINSDMNPEDARSMCCRLRI
DNRQLQVRGGGLFGSNPLTGSIGVITINMPRIGYLSKTEGEFLDRLNRLMILARESLETKRKVLEKFTDRNLYPYTKYYL
RNVKERFGEYWKNHFSTIGLVGMNEACLNLLGKNIASEEGQAFTKNVLDFMRDRLVEFQEETGNNYNLESTPAEGTSYRL
AQIDRKKYADIRLATDEQELIEGVESFYTNSTQLPVNYTDDVFEALELQDEIQSKYTGGTVFHTYAGERIEDPEAVKKLV
RKICSNYHLPYLTFTPTFSVCPSHGYISGEQATCPECNEPCEIYSRVVGYLRPIGQWNKGKRQEFSMRRVYRFQA

Sequences:

>Translated_715_residues
MRCAICKGSRHRLYRGALMYTEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKLTIKVMSLAEKIFDSRIISVE
EIQDIVEEVLLSTYSRTAKAYIIYRDQHARLREITNRMEVDLVDQYLKKKDWKINENSNMDYSLQGLNNYISSEVSKIYW
LNEVYSPEVRKAHNEGEFHIHDLSLLSVYCVGWDLLDLLMTGFKGVSGKVESKPAKHLRSALGQVVNFFYTLQGEAAGAQ
AFSNFDTLLAPFIRYDGLTFDEVKQALQEFIFNINVPTRVGFQTPFTNVTLDVTVPRYYAGQNVIIGGEPQEETYSEFQE
EMNVFNKAFLQVMAEGDAKGRVFTFPIPTYNITRDFNWDDPNLKDLWEMTAKYGVPYFSNFINSDMNPEDARSMCCRLRI
DNRQLQVRGGGLFGSNPLTGSIGVITINMPRIGYLSKTEGEFLDRLNRLMILARESLETKRKVLEKFTDRNLYPYTKYYL
RNVKERFGEYWKNHFSTIGLVGMNEACLNLLGKNIASEEGQAFTKNVLDFMRDRLVEFQEETGNNYNLESTPAEGTSYRL
AQIDRKKYADIRLATDEQELIEGVESFYTNSTQLPVNYTDDVFEALELQDEIQSKYTGGTVFHTYAGERIEDPEAVKKLV
RKICSNYHLPYLTFTPTFSVCPSHGYISGEQATCPECNEPCEIYSRVVGYLRPIGQWNKGKRQEFSMRRVYRFQA
>Mature_715_residues
MRCAICKGSRHRLYRGALMYTEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKLTIKVMSLAEKIFDSRIISVE
EIQDIVEEVLLSTYSRTAKAYIIYRDQHARLREITNRMEVDLVDQYLKKKDWKINENSNMDYSLQGLNNYISSEVSKIYW
LNEVYSPEVRKAHNEGEFHIHDLSLLSVYCVGWDLLDLLMTGFKGVSGKVESKPAKHLRSALGQVVNFFYTLQGEAAGAQ
AFSNFDTLLAPFIRYDGLTFDEVKQALQEFIFNINVPTRVGFQTPFTNVTLDVTVPRYYAGQNVIIGGEPQEETYSEFQE
EMNVFNKAFLQVMAEGDAKGRVFTFPIPTYNITRDFNWDDPNLKDLWEMTAKYGVPYFSNFINSDMNPEDARSMCCRLRI
DNRQLQVRGGGLFGSNPLTGSIGVITINMPRIGYLSKTEGEFLDRLNRLMILARESLETKRKVLEKFTDRNLYPYTKYYL
RNVKERFGEYWKNHFSTIGLVGMNEACLNLLGKNIASEEGQAFTKNVLDFMRDRLVEFQEETGNNYNLESTPAEGTSYRL
AQIDRKKYADIRLATDEQELIEGVESFYTNSTQLPVNYTDDVFEALELQDEIQSKYTGGTVFHTYAGERIEDPEAVKKLV
RKICSNYHLPYLTFTPTFSVCPSHGYISGEQATCPECNEPCEIYSRVVGYLRPIGQWNKGKRQEFSMRRVYRFQA

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=744, Percent_Identity=24.5967741935484, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 82409; Mature: 82409

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCAICKGSRHRLYRGALMYTEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKL
CCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHH
TIKVMSLAEKIFDSRIISVEEIQDIVEEVLLSTYSRTAKAYIIYRDQHARLREITNRMEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHH
DLVDQYLKKKDWKINENSNMDYSLQGLNNYISSEVSKIYWLNEVYSPEVRKAHNEGEFHI
HHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEE
HDLSLLSVYCVGWDLLDLLMTGFKGVSGKVESKPAKHLRSALGQVVNFFYTLQGEAAGAQ
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
AFSNFDTLLAPFIRYDGLTFDEVKQALQEFIFNINVPTRVGFQTPFTNVTLDVTVPRYYA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEC
GQNVIIGGEPQEETYSEFQEEMNVFNKAFLQVMAEGDAKGRVFTFPIPTYNITRDFNWDD
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCC
PNLKDLWEMTAKYGVPYFSNFINSDMNPEDARSMCCRLRIDNRQLQVRGGGLFGSNPLTG
CCHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHEEECCCEEEEEECCEECCCCCCC
SIGVITINMPRIGYLSKTEGEFLDRLNRLMILARESLETKRKVLEKFTDRNLYPYTKYYL
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RNVKERFGEYWKNHFSTIGLVGMNEACLNLLGKNIASEEGQAFTKNVLDFMRDRLVEFQE
HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ETGNNYNLESTPAEGTSYRLAQIDRKKYADIRLATDEQELIEGVESFYTNSTQLPVNYTD
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCH
DVFEALELQDEIQSKYTGGTVFHTYAGERIEDPEAVKKLVRKICSNYHLPYLTFTPTFSV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
CPSHGYISGEQATCPECNEPCEIYSRVVGYLRPIGQWNKGKRQEFSMRRVYRFQA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRCAICKGSRHRLYRGALMYTEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKL
CCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHH
TIKVMSLAEKIFDSRIISVEEIQDIVEEVLLSTYSRTAKAYIIYRDQHARLREITNRMEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHH
DLVDQYLKKKDWKINENSNMDYSLQGLNNYISSEVSKIYWLNEVYSPEVRKAHNEGEFHI
HHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEE
HDLSLLSVYCVGWDLLDLLMTGFKGVSGKVESKPAKHLRSALGQVVNFFYTLQGEAAGAQ
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
AFSNFDTLLAPFIRYDGLTFDEVKQALQEFIFNINVPTRVGFQTPFTNVTLDVTVPRYYA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEC
GQNVIIGGEPQEETYSEFQEEMNVFNKAFLQVMAEGDAKGRVFTFPIPTYNITRDFNWDD
CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCC
PNLKDLWEMTAKYGVPYFSNFINSDMNPEDARSMCCRLRIDNRQLQVRGGGLFGSNPLTG
CCHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHEEECCCEEEEEECCEECCCCCCC
SIGVITINMPRIGYLSKTEGEFLDRLNRLMILARESLETKRKVLEKFTDRNLYPYTKYYL
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
RNVKERFGEYWKNHFSTIGLVGMNEACLNLLGKNIASEEGQAFTKNVLDFMRDRLVEFQE
HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ETGNNYNLESTPAEGTSYRLAQIDRKKYADIRLATDEQELIEGVESFYTNSTQLPVNYTD
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCH
DVFEALELQDEIQSKYTGGTVFHTYAGERIEDPEAVKKLVRKICSNYHLPYLTFTPTFSV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
CPSHGYISGEQATCPECNEPCEIYSRVVGYLRPIGQWNKGKRQEFSMRRVYRFQA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]