| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yhbJ [C]
Identifier: 85859062
GI number: 85859062
Start: 1234225
End: 1235148
Strand: Direct
Name: yhbJ [C]
Synonym: SYN_00941
Alternate gene names: 85859062
Gene position: 1234225-1235148 (Clockwise)
Preceding gene: 85859061
Following gene: 85859074
Centisome position: 38.82
GC content: 48.7
Gene sequence:
>924_bases ATGCCCGGTGGCGGAAATGGAATCCTGTATTCGAACCTTGCAGCGGTTAAGGAGATGAAGATGAATAACCTTCGCGTAGT CATTATTACCGGTCTTTCCGGTTCAGGGAAAAGCACGGCGTTAAGAGCACTGGAGGATATCGGTTTTTATTGCGTGGACA ATATGCCCGTTGTCCTGCTGCCGCAGTTTCTGGAAATCCAGTCCGACAAATCAAAGGATATCTCTCAAGTGGCCATGGTG ATGGACTTGAGGGAAAAATCATTTATCGAAACTTATAAGGGCATCTTCGAACAGATCAAAGCCCGGGGTTATAAGATCGA GATCGTTTTTCTCTATGCCACCGACGACGCTCTGCTGCATCGCTTCAGCGAAACGAGAAGGGTTCACCCTTTGTCGAGTG TTTCGATCATGGAAGGGATTCGTCTGGAGCGCGAGCAGCTTCGCGCCCTGGAGGAAATGGCCGATAAGGTGATTGATACG ACTTCCTGCAATGTCCATCAGTTAAAGGATATCGTCCAGCGTCATTTTCTGCCTTCCTCCACGGCCAGACGGTTGTTTAT TCATCTGATCTCTTTCGGCTATCGTTACGGTCTCCCGGCCGATGCCGATTTGGTTCTGGATGTTCGTTTTCTTCCCAATC CCTATTGGGTTGAAAGCTTAAAATCCTTCAATGGTCACCATCAGGATGTTCGGCGGTATGTTCTGAGTGCTGAAGCGAGT TCCATCTTTCTTCAGAAGCTGTTCGACCTGATGGAATTTTTGATTCCTCTTTATGAAAAGGAAGGAAAACCACGAATAAC CATTGCCGTGGGATGCACGGGGGGGAAGCATCGCTCCGTTGTCATGGCGAATGAATTGTGGTCCTACTTTTCCGGCCGGG ATTATCCGGTAAACGTGAACCACCGCGACGTTGGTAAAAGCTGA
Upstream 100 bases:
>100_bases CGGATAAGAATAGAGAGTCGGGCAAGCCTTCCAAGGTTCTGAAGAATATCATGGGAGTTGATCTGCCCTGTGTCTCGATA AGGGCTTCAAGGGATGCTTC
Downstream 100 bases:
>100_bases TGGCTCATCGCGACAACCTGCTTTTCAAAGAATGACGGTTTTTAAAAAACTAAAAACTCACCGCCATTTTTCGCAGGACA TTGTCCTGAATCCAGTGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MPGGGNGILYSNLAAVKEMKMNNLRVVIITGLSGSGKSTALRALEDIGFYCVDNMPVVLLPQFLEIQSDKSKDISQVAMV MDLREKSFIETYKGIFEQIKARGYKIEIVFLYATDDALLHRFSETRRVHPLSSVSIMEGIRLEREQLRALEEMADKVIDT TSCNVHQLKDIVQRHFLPSSTARRLFIHLISFGYRYGLPADADLVLDVRFLPNPYWVESLKSFNGHHQDVRRYVLSAEAS SIFLQKLFDLMEFLIPLYEKEGKPRITIAVGCTGGKHRSVVMANELWSYFSGRDYPVNVNHRDVGKS
Sequences:
>Translated_307_residues MPGGGNGILYSNLAAVKEMKMNNLRVVIITGLSGSGKSTALRALEDIGFYCVDNMPVVLLPQFLEIQSDKSKDISQVAMV MDLREKSFIETYKGIFEQIKARGYKIEIVFLYATDDALLHRFSETRRVHPLSSVSIMEGIRLEREQLRALEEMADKVIDT TSCNVHQLKDIVQRHFLPSSTARRLFIHLISFGYRYGLPADADLVLDVRFLPNPYWVESLKSFNGHHQDVRRYVLSAEAS SIFLQKLFDLMEFLIPLYEKEGKPRITIAVGCTGGKHRSVVMANELWSYFSGRDYPVNVNHRDVGKS >Mature_306_residues PGGGNGILYSNLAAVKEMKMNNLRVVIITGLSGSGKSTALRALEDIGFYCVDNMPVVLLPQFLEIQSDKSKDISQVAMVM DLREKSFIETYKGIFEQIKARGYKIEIVFLYATDDALLHRFSETRRVHPLSSVSIMEGIRLEREQLRALEEMADKVIDTT SCNVHQLKDIVQRHFLPSSTARRLFIHLISFGYRYGLPADADLVLDVRFLPNPYWVESLKSFNGHHQDVRRYVLSAEASS IFLQKLFDLMEFLIPLYEKEGKPRITIAVGCTGGKHRSVVMANELWSYFSGRDYPVNVNHRDVGKS
Specific function: Displays ATPase and GTPase activities [H]
COG id: COG1660
COG function: function code R; Predicted P-loop-containing kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0042 family [H]
Homologues:
Organism=Escherichia coli, GI1789598, Length=286, Percent_Identity=39.5104895104895, Blast_Score=203, Evalue=1e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005337 [H]
Pfam domain/function: PF03668 ATP_bind_2 [H]
EC number: NA
Molecular weight: Translated: 34884; Mature: 34753
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGGGNGILYSNLAAVKEMKMNNLRVVIITGLSGSGKSTALRALEDIGFYCVDNMPVVLL CCCCCCCEEHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEC PQFLEIQSDKSKDISQVAMVMDLREKSFIETYKGIFEQIKARGYKIEIVFLYATDDALLH CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHH RFSETRRVHPLSSVSIMEGIRLEREQLRALEEMADKVIDTTSCNVHQLKDIVQRHFLPSS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH TARRLFIHLISFGYRYGLPADADLVLDVRFLPNPYWVESLKSFNGHHQDVRRYVLSAEAS HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHH SIFLQKLFDLMEFLIPLYEKEGKPRITIAVGCTGGKHRSVVMANELWSYFSGRDYPVNVN HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHCCCCCEECCC HRDVGKS CCCCCCC >Mature Secondary Structure PGGGNGILYSNLAAVKEMKMNNLRVVIITGLSGSGKSTALRALEDIGFYCVDNMPVVLL CCCCCCEEHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEC PQFLEIQSDKSKDISQVAMVMDLREKSFIETYKGIFEQIKARGYKIEIVFLYATDDALLH CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHH RFSETRRVHPLSSVSIMEGIRLEREQLRALEEMADKVIDTTSCNVHQLKDIVQRHFLPSS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH TARRLFIHLISFGYRYGLPADADLVLDVRFLPNPYWVESLKSFNGHHQDVRRYVLSAEAS HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHH SIFLQKLFDLMEFLIPLYEKEGKPRITIAVGCTGGKHRSVVMANELWSYFSGRDYPVNVN HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHCCCCCEECCC HRDVGKS CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA