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The map label for this gene is erfK [H]

Identifier: 85858976

GI number: 85858976

Start: 1159026

End: 1159682

Strand: Direct

Name: erfK [H]

Synonym: SYN_01021

Alternate gene names: 85858976

Gene position: 1159026-1159682 (Clockwise)

Preceding gene: 85858975

Following gene: 85858978

Centisome position: 36.46

GC content: 54.95

Gene sequence:

>657_bases
ATGAAGGGAAATGAAAAGGATGAGATGAAAAGGGAAGATCCTGGCAAACAGCGTGCGAAACGACCAGCCGGTCTGTCCGG
TCCCAGCCGACGGTTTTTTCTCTCCGGATTGCTGATTGTTTTACTGACCCTGTGCGCGACAGTGGATGCAGGCAGGCGAT
CCCATGCGGGAATGCTTCAGGGGCAGCGCACCGTGGGAATTGACAGACGCCACGCAATTGAAATCAGCGTCAGCCGGAAA
GTTTTGATTCTTTATGAAAAGACTGCGGGTAATAAACTGCTTCCCCGACGGGAATACAAGGTTGGGACCGCTGTTCTGGG
GCTCGATGTCTATCCCCTCGGCAAAGGTCAGGTGACGGCCATTGACTTTTATCCCTCGTGGTATCCAACGCCGTACTCCC
GGGAGGTTTTTCGAAAGAGGGGAATTGAGCTCCCGCCAGCGGTGCCTCCCGGCCACCCTCTGAACTACATGGGCGCCGCA
AAGATTTCTCTTTCCCACAGGACCAGGAAAGGGGCCATCTACCGAATTCACGGCAACAACAATCCCGGACGCGTGGGCCG
GCGGGTAACGGGTGGGTGCTTCGTCATGTATAACGATGATGTGCTTGAACTGGCCAGGACCATTTCCGTGGGAACGGAGG
TGAATATTCTTCCATGA

Upstream 100 bases:

>100_bases
CTGTCCCACCACGAAAAGGTCAACGCCTGTCGCTGCTGTTTGCCTGTTTAAAACAGGGGTCTGATTTATACAGGCAAATG
GCTGTAATGACAAGGTCGAA

Downstream 100 bases:

>100_bases
TGGCTCTTCAGATACTCAGATAATTTGTTTTAATTTTGCCTGACTGTGTTATGTATTCCGGGATACGCGGCTGGAGAACC
TATTGAAAATCTGCAAAATG

Product: erfK/ybiS/ycfS/ynhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKGNEKDEMKREDPGKQRAKRPAGLSGPSRRFFLSGLLIVLLTLCATVDAGRRSHAGMLQGQRTVGIDRRHAIEISVSRK
VLILYEKTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTAIDFYPSWYPTPYSREVFRKRGIELPPAVPPGHPLNYMGAA
KISLSHRTRKGAIYRIHGNNNPGRVGRRVTGGCFVMYNDDVLELARTISVGTEVNILP

Sequences:

>Translated_218_residues
MKGNEKDEMKREDPGKQRAKRPAGLSGPSRRFFLSGLLIVLLTLCATVDAGRRSHAGMLQGQRTVGIDRRHAIEISVSRK
VLILYEKTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTAIDFYPSWYPTPYSREVFRKRGIELPPAVPPGHPLNYMGAA
KISLSHRTRKGAIYRIHGNNNPGRVGRRVTGGCFVMYNDDVLELARTISVGTEVNILP
>Mature_218_residues
MKGNEKDEMKREDPGKQRAKRPAGLSGPSRRFFLSGLLIVLLTLCATVDAGRRSHAGMLQGQRTVGIDRRHAIEISVSRK
VLILYEKTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTAIDFYPSWYPTPYSREVFRKRGIELPPAVPPGHPLNYMGAA
KISLSHRTRKGAIYRIHGNNNPGRVGRRVTGGCFVMYNDDVLELARTISVGTEVNILP

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=122, Percent_Identity=37.7049180327869, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787356, Length=121, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787968, Length=143, Percent_Identity=33.5664335664336, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24163; Mature: 24163

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGNEKDEMKREDPGKQRAKRPAGLSGPSRRFFLSGLLIVLLTLCATVDAGRRSHAGMLQ
CCCCCCCHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GQRTVGIDRRHAIEISVSRKVLILYEKTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTA
CCEEECCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE
IDFYPSWYPTPYSREVFRKRGIELPPAVPPGHPLNYMGAAKISLSHRTRKGAIYRIHGNN
EEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC
NPGRVGRRVTGGCFVMYNDDVLELARTISVGTEVNILP
CCCCCCCEECCCEEEEECCHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MKGNEKDEMKREDPGKQRAKRPAGLSGPSRRFFLSGLLIVLLTLCATVDAGRRSHAGMLQ
CCCCCCCHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GQRTVGIDRRHAIEISVSRKVLILYEKTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTA
CCEEECCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE
IDFYPSWYPTPYSREVFRKRGIELPPAVPPGHPLNYMGAAKISLSHRTRKGAIYRIHGNN
EEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC
NPGRVGRRVTGGCFVMYNDDVLELARTISVGTEVNILP
CCCCCCCEECCCEEEEECCHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]