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The map label for this gene is yhcK [H]

Identifier: 85858866

GI number: 85858866

Start: 1052221

End: 1053291

Strand: Direct

Name: yhcK [H]

Synonym: SYN_01324

Alternate gene names: 85858866

Gene position: 1052221-1053291 (Clockwise)

Preceding gene: 85858865

Following gene: 85858875

Centisome position: 33.1

GC content: 51.17

Gene sequence:

>1071_bases
GTGAAGGTTTTTATGGCAAAAGATCGCGACACAATGACAACCGTTGAGCGGGAGGAACTCCGAGGAATCTCTCGATCAGT
GGCGGAAATCGAATGGCTGCAGCTTATCATTGTCCTGCTTTATTATGCCTTTGGCGGTATTGCAGACGAAGATAAGCCGA
TCGTCGTCCTTTCTCTTGTTTTCTATGCCGCTTTCATCATGGGTTTCCGCTACGCAAATTTTTTTAAACAGGAATCCCGC
TGGAAACTGGCAGTGGAAACCTGGATTATGACAGGCTTTGTCACCTTTGCGCTGTGGCATACAGGAAAACTGGAAAGCCC
GCTGTTGAACTCCTACCTGCTGGTGATCATCACCAGTGCGCTGGCCCTGGGCAAGCTGACCACCCTCCTGGAACTGGCCC
TGATCGGCACCTGCTTTATTTTCCTCGGAAGCCACTCATCTATAAATGAACTTCTGTCGCTGAAATACGCCGGTGGAATG
TTCGCCCAGTTCGCTCCCTTTGTGCTGGTGGCGTACATCGCCACCATGTTTGCCTCCGATATCCGCTATGGTCTCAACAA
AGTCAAGATGATGTCGGAAACCGACGAGTTGACTGGAATTTACAACCGCAGAGGTTTTGCCATCGTTGCCGGACGCCTTT
TGGGACAGTCGGCACGGTACAGCCGTCCTTTGAGTCTGCTTTTGATCGACAGTGATAATCTGAAGAAAATTAATGATGAA
TATGGCCACCATGCCGGTGATCAGCTTCTTATTACCCTGGTTAATACAATCCAGGCTCAACTGCGTCATACCGACATTCT
GGCGCGCCATGGCGGCGACGAGTTCATCATTCTGCTTCCGGAGACTCCACCATCAGGGGCCTTGGACGTTGCTGAACGAA
TCCGAAATGCCATTGAGACTACCCCCATCGTTCTGGAAGGCAAAATTGTCCACACCACGGCCAGCATCGGCGTTGCCTCA
TATCCGTCTGAGGGTTACAACATCGATGTCCTTCTTGCCCAAGCCGACCACAAGATGTATGCGGCAAAACTCGGTGGCCG
TAACCGGGTTGTCATGGAGGTTGCCGTATAG

Upstream 100 bases:

>100_bases
GCCTATGAAAATTTCACACAAAAAAATTGACAGTACCTGCGAGAAGCTTCTTCAAAAGCAATCAATGGTCAGGTTCTGCA
AACACAGCATGTAATCCAAA

Downstream 100 bases:

>100_bases
ACATTCCTGTCGCCTTTGTCATGAAAAAATTTTTTGATGAAAAATCTTCATGATTTGCGCAAGAGAAGCAGTTTGTAACT
GTGCGATAAATCTACAGCGA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MKVFMAKDRDTMTTVEREELRGISRSVAEIEWLQLIIVLLYYAFGGIADEDKPIVVLSLVFYAAFIMGFRYANFFKQESR
WKLAVETWIMTGFVTFALWHTGKLESPLLNSYLLVIITSALALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGM
FAQFAPFVLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDE
YGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIETTPIVLEGKIVHTTASIGVAS
YPSEGYNIDVLLAQADHKMYAAKLGGRNRVVMEVAV

Sequences:

>Translated_356_residues
MKVFMAKDRDTMTTVEREELRGISRSVAEIEWLQLIIVLLYYAFGGIADEDKPIVVLSLVFYAAFIMGFRYANFFKQESR
WKLAVETWIMTGFVTFALWHTGKLESPLLNSYLLVIITSALALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGM
FAQFAPFVLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDE
YGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIETTPIVLEGKIVHTTASIGVAS
YPSEGYNIDVLLAQADHKMYAAKLGGRNRVVMEVAV
>Mature_356_residues
MKVFMAKDRDTMTTVEREELRGISRSVAEIEWLQLIIVLLYYAFGGIADEDKPIVVLSLVFYAAFIMGFRYANFFKQESR
WKLAVETWIMTGFVTFALWHTGKLESPLLNSYLLVIITSALALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGM
FAQFAPFVLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDE
YGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIETTPIVLEGKIVHTTASIGVAS
YPSEGYNIDVLLAQADHKMYAAKLGGRNRVVMEVAV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=39.7590361445783, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=31.3829787234043, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=38.2165605095541, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082007, Length=194, Percent_Identity=32.9896907216495, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787802, Length=230, Percent_Identity=30, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787262, Length=190, Percent_Identity=34.7368421052632, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=34.4827586206897, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.7485380116959, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=33.5403726708075, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=31.9767441860465, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=33.9622641509434, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39565; Mature: 39565

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVFMAKDRDTMTTVEREELRGISRSVAEIEWLQLIIVLLYYAFGGIADEDKPIVVLSLV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHH
FYAAFIMGFRYANFFKQESRWKLAVETWIMTGFVTFALWHTGKLESPLLNSYLLVIITSA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGMFAQFAPFVLVAYIATMFASD
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEEEECCCCCHHHHHH
YGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIET
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
TPIVLEGKIVHTTASIGVASYPSEGYNIDVLLAQADHKMYAAKLGGRNRVVMEVAV
CCEEEECEEEEEEECCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCCEEEEEEEC
>Mature Secondary Structure
MKVFMAKDRDTMTTVEREELRGISRSVAEIEWLQLIIVLLYYAFGGIADEDKPIVVLSLV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHH
FYAAFIMGFRYANFFKQESRWKLAVETWIMTGFVTFALWHTGKLESPLLNSYLLVIITSA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGMFAQFAPFVLVAYIATMFASD
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEEEECCCCCHHHHHH
YGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIET
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
TPIVLEGKIVHTTASIGVASYPSEGYNIDVLLAQADHKMYAAKLGGRNRVVMEVAV
CCEEEECEEEEEEECCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]