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The map label for this gene is yrbD [C]

Identifier: 85858834

GI number: 85858834

Start: 1026242

End: 1027723

Strand: Direct

Name: yrbD [C]

Synonym: SYN_00409

Alternate gene names: 85858834

Gene position: 1026242-1027723 (Clockwise)

Preceding gene: 85858833

Following gene: 85858836

Centisome position: 32.28

GC content: 54.45

Gene sequence:

>1482_bases
ATGACCGCCATAAGTTCGGAGGCAAAAGTCGGGTTGTTTGTTCTCGTGGGGCTGATTATCCTGGGATACATGTCTTTTCG
GGTTGGGCAGCAGGGGTTTGGTCTGAAAAAGGGTTATCGGGTGGAGGTCGCCTTTGACAACGTCTCCGGTCTCGAAAAAG
ATGCCTCCGTTCAGATTGCCGGGGTTGAAATGGGCAGGGTCGAGTCCATCCGCCTGAAGGACGGTAAGGCTATGGTGACC
CTGCGCATCAATCCCGATGTAAAACTGGAGCGGGACGTGATGGCGTCGATCAAAACGCACGGCGTTCTGGGGGATAAATA
TATCGAGCTTTCTCCGGGGACGAAAGGCGAGGGGTATATCGCGCCGGGGGGACAGATAGCCGTTGCCGAACGGGCGGCGG
ATATTGACCGCCTCCTTCAGCAGTTCGCCCTTATCGCCGATGACGTCAAAGCCGTGAGCGGAGCGCTGAGCAAGGTGCTA
GGCGGCCAGGCAGGGGAAGAATCCATCGGGGCCATCATCGAGAATACCCGGCAGTTGACTTGCAATTTGAACAAGGTCGT
CCTGAACAACGAGGAAAACCTGCGCACCATGCTGGAAAATACCCGTGAACTGACGGGAAATCTCAACTCGATGGTGACTC
GAAACGATGAAAACGTGACGCAGATGATCGAGAGTCTCAAATCGGCTTCCCGGGAAATGGAAAAGACCTTCGCCGCCCTG
AGCGATATTTCCGAGGGCATGAAAAGAGGCGAAGGGACGATGGGTCAACTCCTGACAGATAAGACCATGGCCGAGAAACT
CAATCGAACCATGACCTCGCTGGAAAGTGTGGCCGAAAAGATCGACCAGGGCAAAGGGACCATCGGAAAACTGGTTAACG
AACAGGAAACCGTCGACAATCTGAATGAGAGCCTGGGCGGAATCAACCGCTATGTCAATAAAGCGGAGCAGTTCCGCACA
TTCCTCAGCTATCGGGGGGAATATCTATTTGACAAGAGCGATGCGAAGAGCTATCTGGATGTCCGCATCCAGCCCAGACA
CGACCGTTTTTACGTCCTTGGCCTTGTCAATGATCCCCGGGGGAGGCGCACCGTCAAGGATACCACTGTCAACGGCGTTA
CGACCCGCACGGAGGAATGGGACAAGAGCGAACTGCTCTTTAATGCCCAGCTCGGCAAGCGGTTCCGCAACGTGGTGCTG
CGTGGGGGTCTTTTCGAGTCGACGGGTGGTGTCGGGATCGATTATCTGACCCTGAACGACAACCTCAAACTCACTTTCGA
AGCCTTCGATTTTTCCGATGACCGGGATGCCCATCTCAAGGGTTATGCGGAATACCGGTTGTTCAAGCATCTCTATCTGA
CTGCGGGGTGGGATGACTTCATCAGCGATGAGGGGAATCGTTCTCCCTTCGCAGGATTGGCCATCCGATTTGAAGATGAT
GATCTCAAATATCTGCTGACCTCGACCCCTATTCCCCGCTAG

Upstream 100 bases:

>100_bases
GATTCTCTGATTCCAGCCGGCAGGGCGGGCCGCGAAATCATATGGATCGGAGTGAAGTGTTATTATTTTTAATACACCTG
CGCGCAGGCTGGAGGTTGGA

Downstream 100 bases:

>100_bases
CCCCAAAATGGGTTTTCTGTTTCGTTGAAGACAACGTTGCTGACGGGCAGAGGATTCCAGTGAATACAACCAGCGGAAAG
TGCGCCATACGGATATCCGG

Product: organic solvents resistance ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MTAISSEAKVGLFVLVGLIILGYMSFRVGQQGFGLKKGYRVEVAFDNVSGLEKDASVQIAGVEMGRVESIRLKDGKAMVT
LRINPDVKLERDVMASIKTHGVLGDKYIELSPGTKGEGYIAPGGQIAVAERAADIDRLLQQFALIADDVKAVSGALSKVL
GGQAGEESIGAIIENTRQLTCNLNKVVLNNEENLRTMLENTRELTGNLNSMVTRNDENVTQMIESLKSASREMEKTFAAL
SDISEGMKRGEGTMGQLLTDKTMAEKLNRTMTSLESVAEKIDQGKGTIGKLVNEQETVDNLNESLGGINRYVNKAEQFRT
FLSYRGEYLFDKSDAKSYLDVRIQPRHDRFYVLGLVNDPRGRRTVKDTTVNGVTTRTEEWDKSELLFNAQLGKRFRNVVL
RGGLFESTGGVGIDYLTLNDNLKLTFEAFDFSDDRDAHLKGYAEYRLFKHLYLTAGWDDFISDEGNRSPFAGLAIRFEDD
DLKYLLTSTPIPR

Sequences:

>Translated_493_residues
MTAISSEAKVGLFVLVGLIILGYMSFRVGQQGFGLKKGYRVEVAFDNVSGLEKDASVQIAGVEMGRVESIRLKDGKAMVT
LRINPDVKLERDVMASIKTHGVLGDKYIELSPGTKGEGYIAPGGQIAVAERAADIDRLLQQFALIADDVKAVSGALSKVL
GGQAGEESIGAIIENTRQLTCNLNKVVLNNEENLRTMLENTRELTGNLNSMVTRNDENVTQMIESLKSASREMEKTFAAL
SDISEGMKRGEGTMGQLLTDKTMAEKLNRTMTSLESVAEKIDQGKGTIGKLVNEQETVDNLNESLGGINRYVNKAEQFRT
FLSYRGEYLFDKSDAKSYLDVRIQPRHDRFYVLGLVNDPRGRRTVKDTTVNGVTTRTEEWDKSELLFNAQLGKRFRNVVL
RGGLFESTGGVGIDYLTLNDNLKLTFEAFDFSDDRDAHLKGYAEYRLFKHLYLTAGWDDFISDEGNRSPFAGLAIRFEDD
DLKYLLTSTPIPR
>Mature_492_residues
TAISSEAKVGLFVLVGLIILGYMSFRVGQQGFGLKKGYRVEVAFDNVSGLEKDASVQIAGVEMGRVESIRLKDGKAMVTL
RINPDVKLERDVMASIKTHGVLGDKYIELSPGTKGEGYIAPGGQIAVAERAADIDRLLQQFALIADDVKAVSGALSKVLG
GQAGEESIGAIIENTRQLTCNLNKVVLNNEENLRTMLENTRELTGNLNSMVTRNDENVTQMIESLKSASREMEKTFAALS
DISEGMKRGEGTMGQLLTDKTMAEKLNRTMTSLESVAEKIDQGKGTIGKLVNEQETVDNLNESLGGINRYVNKAEQFRTF
LSYRGEYLFDKSDAKSYLDVRIQPRHDRFYVLGLVNDPRGRRTVKDTTVNGVTTRTEEWDKSELLFNAQLGKRFRNVVLR
GGLFESTGGVGIDYLTLNDNLKLTFEAFDFSDDRDAHLKGYAEYRLFKHLYLTAGWDDFISDEGNRSPFAGLAIRFEDDD
LKYLLTSTPIPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54715; Mature: 54584

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAISSEAKVGLFVLVGLIILGYMSFRVGQQGFGLKKGYRVEVAFDNVSGLEKDASVQIA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE
GVEMGRVESIRLKDGKAMVTLRINPDVKLERDVMASIKTHGVLGDKYIELSPGTKGEGYI
EEECCCEEEEEEECCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCCEEEECCCCCCCEEE
APGGQIAVAERAADIDRLLQQFALIADDVKAVSGALSKVLGGQAGEESIGAIIENTRQLT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEE
CNLNKVVLNNEENLRTMLENTRELTGNLNSMVTRNDENVTQMIESLKSASREMEKTFAAL
EEEEEEEECCCHHHHHHHHHHHHHHCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
SDISEGMKRGEGTMGQLLTDKTMAEKLNRTMTSLESVAEKIDQGKGTIGKLVNEQETVDN
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH
LNESLGGINRYVNKAEQFRTFLSYRGEYLFDKSDAKSYLDVRIQPRHDRFYVLGLVNDPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEECCCEEEEEEEEECCC
GRRTVKDTTVNGVTTRTEEWDKSELLFNAQLGKRFRNVVLRGGLFESTGGVGIDYLTLND
CCCEECCCCCCCEECCCCCCCCHHEEEEHHHHHHHHHHHHCCCCEECCCCCEEEEEEECC
NLKLTFEAFDFSDDRDAHLKGYAEYRLFKHLYLTAGWDDFISDEGNRSPFAGLAIRFEDD
CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCCEEEEEEEECC
DLKYLLTSTPIPR
CCEEEEECCCCCC
>Mature Secondary Structure 
TAISSEAKVGLFVLVGLIILGYMSFRVGQQGFGLKKGYRVEVAFDNVSGLEKDASVQIA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE
GVEMGRVESIRLKDGKAMVTLRINPDVKLERDVMASIKTHGVLGDKYIELSPGTKGEGYI
EEECCCEEEEEEECCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCCEEEECCCCCCCEEE
APGGQIAVAERAADIDRLLQQFALIADDVKAVSGALSKVLGGQAGEESIGAIIENTRQLT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEE
CNLNKVVLNNEENLRTMLENTRELTGNLNSMVTRNDENVTQMIESLKSASREMEKTFAAL
EEEEEEEECCCHHHHHHHHHHHHHHCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
SDISEGMKRGEGTMGQLLTDKTMAEKLNRTMTSLESVAEKIDQGKGTIGKLVNEQETVDN
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHH
LNESLGGINRYVNKAEQFRTFLSYRGEYLFDKSDAKSYLDVRIQPRHDRFYVLGLVNDPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEECCCEEEEEEEEECCC
GRRTVKDTTVNGVTTRTEEWDKSELLFNAQLGKRFRNVVLRGGLFESTGGVGIDYLTLND
CCCEECCCCCCCEECCCCCCCCHHEEEEHHHHHHHHHHHHCCCCEECCCCCEEEEEEECC
NLKLTFEAFDFSDDRDAHLKGYAEYRLFKHLYLTAGWDDFISDEGNRSPFAGLAIRFEDD
CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCCEEEEEEEECC
DLKYLLTSTPIPR
CCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]