| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858811
Identifier: 85858811
GI number: 85858811
Start: 1000268
End: 1002778
Strand: Direct
Name: 85858811
Synonym: SYN_01464
Alternate gene names: NA
Gene position: 1000268-1002778 (Clockwise)
Preceding gene: 85858809
Following gene: 85858812
Centisome position: 31.46
GC content: 46.63
Gene sequence:
>2511_bases ATGAAATTACCGTTTGGTTTTTCAAATAAAAACAGGCGATTTTTAATCGTAGCCATCCTTTGTAGCATGGGGTGGGTCCT GTGGCCGCACCTCACCTGTCACGGGGAAACAAACCGGCAGGATATTCACGCGAGACGCGTATCCTCCTATCAGAATGTCG ATGGTGCGAAACAAGAGGTTAATTTATTAAAATCGAGAGGTTACAATGCATACCTTGAAAAGGTCCTGATTCCTGACAAG GGAGTCTGGTACCGGGTTTTTATCATGAAAGGTCCGCCGGCGTCACGGAGTCGGGTTTCTGTCGAAAGGAAAAAAAAGAA ACCTGTAAAGGTCCGGCCGTCGACAAATGACCCTGATTCCAGGGTAAAAATGATTCATCGTCCCGCCCGTAAGCAGGTCC CGGATTTTTCGGATCAAGGCATTCGAGATTCTTCCCTTCAACGGCAAACAATCCTGCAAAAAAATGTCATTCCCGATACT GACAATGAAAATGAGGCGCACTTGCCCAAACGGAAGACGGGCAGAGAATCGGATGTGAAAAACAGTCTGGATAGTCCGTC CCCTCGTGTATTTGAAACGGCAAACATTCACTTCGATGCGTGTCGTTACGAAAGGGCTGCCGCGATTCTGTCTTCGATCG TTTCAAAGAAGCATAATGACGATGCATTGCTGGAAAACAGTCTGAGGCTTCTTGCGGACTGTTACTTTTTTCTGGGAAAA GGGAAGGATGGAAGTTTCAATCTGAAAGCCGTTGACGCATATAAACATATACTCCGTCGCTATCCGGACTTGCGAAGCAG AAACGATCTGGTGAATTTCCGCCTGGCAGAATGCCTGGAACAGGCTGGAAACTATGAGGAGGCTTATGCGGCCTATGAGG ATGTCATTCGGAAATATCCGACTTCAAGGTACAAGCAGGATGTGTTGTACAAAATGGGAGAAATTCTCTATCGGACCGGA CGTTTTACCCATGCGATCGAGAAGCTGAGGAATTACCTGGCCGGATATCCCGATGGTCCTTACGCTTCCAGGTCTTCTTT CCTGCTGGGCTACTGTTTTCAACAAACCGGCAGACAGACCGATGGCGCGCTCTGGTATCGGAACGCACTCAACAAGTGGG ATAACTTCGAAGAATTGCCTGCAGATGTCCTTTATGATCTGGGGCTTACCCTCTTTTCCTGGCAGGATTACTCAAGGGCG GCTTCCCTGTTTGCCACTTATCTCAACCTCTACCCGGAAGGGGGCTCGAAAAAAAGTGCCATGTTTTATCTGGGCCGTTC TTTTTATACCCTGAACCGCTTCGCTTCGGCCTTGAAAGTCTTCAGCCTCCTGCTGGAAAACTATCCAGAAAGCGGGGAAG CTTATGAAAGCATTCTTTTTATGGCAAATATCGGCGTTATGGAGCCGACGATGAACTTCAATGTCTGCATGACGGGATGG GATTATTACAGAAATCCAGTTGGGACATATGATTGGATGAGGAGGAAATTCCCCGGCGGCAGATTGGAGGAATGGCTGCT TTATCAAAAGGGATATGCCCTGTGGAAAGCGGGTCGCTGCAAAGAGGCCTTCGACCTCTATTGCCATCTTCTCGATTCTT ACACCCATGGAGATTTTAAGGATAAAAGCCGGGGGTATCTGTTTTTGAATGCAAGGCGATTGATTGAGGAGGCTTATGGA AGGGGTGATGACCTCGCTGTAGCCGATATTTATTATAAGATTCACAACAAAATTTCTCTTTCTGCTGAAACACGGGATCT GTTCTCCAGAGCAGGTGTCAGTCTCCGGAAATTGGGATTTCTCTCAGACGCATCTTCTGTATGGAACAGTCTCAGGCAGC ATGGGCTGAATGCTTCAGGCGCGGCTGTTCTGGAACTCATGGTGGTGGAGGATCCTGGAATCCGGAAGGGGAATGATGTT CCAGAGGAAAAATGGAATGCCCTGATGAAGCAATTTACAGAAAATGACGGCATTCTGAAAGAGACGGCAATAAAAAACCT GGCTGATTATTTTTACCTAAAAGGGCGATATGATAGGGCTGTTTCCTTATATAAAATATTGCTCGAAGGAAAAGACAATC CCGATCTTCTGACGATTAAGGGAAATTATGCCCACGCGTTGAAAAGTAACAACGACTGTGCTTCAGCTATAAAAATTTAT CAGAAGATTATTCATGAATATCGGGACAGCCCGCAGAATTATGAGGAAGAGCTCATCACTGAAGCCTATGCGGGGTTGGT GGACTGTTATTTCGAAAACACCGACTATCAGCGTGGCATAGCTGCCTCTCAACAGGCTGTTCCACGGATGAAAAATCAAC AAAAGCAGATGTGGACCCTTTTCAGAACGGGGCAGAGTTACAGAAAAATGGACGACATGACCATGATGGAAAAAACATTT TCCGAGTTAAAGGAAAAAGGCGATGAGACATTCTGGCCGAAGGTCGTGGATTACTGGGTTGCCGATCAGGCGTGGTCTGA AAACAACATAACGTACATGAGTAGTAATTAA
Upstream 100 bases:
>100_bases AAGGCAGTGTGAAAGACGGAAATTTAAGATACCATTGTTGGATCATTTTTCATAGAAAAATTTTTCCCATGCAGACAGTT TCTGCACTTTTTCATTTGTG
Downstream 100 bases:
>100_bases AATTACTGGATCAAGCATGAATGACATTGCATCGTTACAGAAATCTTTCGAAGGGTTCAATCAGGCGACTTTGCATATTC AGCAGGCTTTTGCGAGTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MKLPFGFSNKNRRFLIVAILCSMGWVLWPHLTCHGETNRQDIHARRVSSYQNVDGAKQEVNLLKSRGYNAYLEKVLIPDK GVWYRVFIMKGPPASRSRVSVERKKKKPVKVRPSTNDPDSRVKMIHRPARKQVPDFSDQGIRDSSLQRQTILQKNVIPDT DNENEAHLPKRKTGRESDVKNSLDSPSPRVFETANIHFDACRYERAAAILSSIVSKKHNDDALLENSLRLLADCYFFLGK GKDGSFNLKAVDAYKHILRRYPDLRSRNDLVNFRLAECLEQAGNYEEAYAAYEDVIRKYPTSRYKQDVLYKMGEILYRTG RFTHAIEKLRNYLAGYPDGPYASRSSFLLGYCFQQTGRQTDGALWYRNALNKWDNFEELPADVLYDLGLTLFSWQDYSRA ASLFATYLNLYPEGGSKKSAMFYLGRSFYTLNRFASALKVFSLLLENYPESGEAYESILFMANIGVMEPTMNFNVCMTGW DYYRNPVGTYDWMRRKFPGGRLEEWLLYQKGYALWKAGRCKEAFDLYCHLLDSYTHGDFKDKSRGYLFLNARRLIEEAYG RGDDLAVADIYYKIHNKISLSAETRDLFSRAGVSLRKLGFLSDASSVWNSLRQHGLNASGAAVLELMVVEDPGIRKGNDV PEEKWNALMKQFTENDGILKETAIKNLADYFYLKGRYDRAVSLYKILLEGKDNPDLLTIKGNYAHALKSNNDCASAIKIY QKIIHEYRDSPQNYEEELITEAYAGLVDCYFENTDYQRGIAASQQAVPRMKNQQKQMWTLFRTGQSYRKMDDMTMMEKTF SELKEKGDETFWPKVVDYWVADQAWSENNITYMSSN
Sequences:
>Translated_836_residues MKLPFGFSNKNRRFLIVAILCSMGWVLWPHLTCHGETNRQDIHARRVSSYQNVDGAKQEVNLLKSRGYNAYLEKVLIPDK GVWYRVFIMKGPPASRSRVSVERKKKKPVKVRPSTNDPDSRVKMIHRPARKQVPDFSDQGIRDSSLQRQTILQKNVIPDT DNENEAHLPKRKTGRESDVKNSLDSPSPRVFETANIHFDACRYERAAAILSSIVSKKHNDDALLENSLRLLADCYFFLGK GKDGSFNLKAVDAYKHILRRYPDLRSRNDLVNFRLAECLEQAGNYEEAYAAYEDVIRKYPTSRYKQDVLYKMGEILYRTG RFTHAIEKLRNYLAGYPDGPYASRSSFLLGYCFQQTGRQTDGALWYRNALNKWDNFEELPADVLYDLGLTLFSWQDYSRA ASLFATYLNLYPEGGSKKSAMFYLGRSFYTLNRFASALKVFSLLLENYPESGEAYESILFMANIGVMEPTMNFNVCMTGW DYYRNPVGTYDWMRRKFPGGRLEEWLLYQKGYALWKAGRCKEAFDLYCHLLDSYTHGDFKDKSRGYLFLNARRLIEEAYG RGDDLAVADIYYKIHNKISLSAETRDLFSRAGVSLRKLGFLSDASSVWNSLRQHGLNASGAAVLELMVVEDPGIRKGNDV PEEKWNALMKQFTENDGILKETAIKNLADYFYLKGRYDRAVSLYKILLEGKDNPDLLTIKGNYAHALKSNNDCASAIKIY QKIIHEYRDSPQNYEEELITEAYAGLVDCYFENTDYQRGIAASQQAVPRMKNQQKQMWTLFRTGQSYRKMDDMTMMEKTF SELKEKGDETFWPKVVDYWVADQAWSENNITYMSSN >Mature_836_residues MKLPFGFSNKNRRFLIVAILCSMGWVLWPHLTCHGETNRQDIHARRVSSYQNVDGAKQEVNLLKSRGYNAYLEKVLIPDK GVWYRVFIMKGPPASRSRVSVERKKKKPVKVRPSTNDPDSRVKMIHRPARKQVPDFSDQGIRDSSLQRQTILQKNVIPDT DNENEAHLPKRKTGRESDVKNSLDSPSPRVFETANIHFDACRYERAAAILSSIVSKKHNDDALLENSLRLLADCYFFLGK GKDGSFNLKAVDAYKHILRRYPDLRSRNDLVNFRLAECLEQAGNYEEAYAAYEDVIRKYPTSRYKQDVLYKMGEILYRTG RFTHAIEKLRNYLAGYPDGPYASRSSFLLGYCFQQTGRQTDGALWYRNALNKWDNFEELPADVLYDLGLTLFSWQDYSRA ASLFATYLNLYPEGGSKKSAMFYLGRSFYTLNRFASALKVFSLLLENYPESGEAYESILFMANIGVMEPTMNFNVCMTGW DYYRNPVGTYDWMRRKFPGGRLEEWLLYQKGYALWKAGRCKEAFDLYCHLLDSYTHGDFKDKSRGYLFLNARRLIEEAYG RGDDLAVADIYYKIHNKISLSAETRDLFSRAGVSLRKLGFLSDASSVWNSLRQHGLNASGAAVLELMVVEDPGIRKGNDV PEEKWNALMKQFTENDGILKETAIKNLADYFYLKGRYDRAVSLYKILLEGKDNPDLLTIKGNYAHALKSNNDCASAIKIY QKIIHEYRDSPQNYEEELITEAYAGLVDCYFENTDYQRGIAASQQAVPRMKNQQKQMWTLFRTGQSYRKMDDMTMMEKTF SELKEKGDETFWPKVVDYWVADQAWSENNITYMSSN
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96632; Mature: 96632
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPFGFSNKNRRFLIVAILCSMGWVLWPHLTCHGETNRQDIHARRVSSYQNVDGAKQEV CCCCCCCCCCCCCEEHHHHHHHCCHHHHCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHH NLLKSRGYNAYLEKVLIPDKGVWYRVFIMKGPPASRSRVSVERKKKKPVKVRPSTNDPDS HHHHHCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEECCCCCCHHH RVKMIHRPARKQVPDFSDQGIRDSSLQRQTILQKNVIPDTDNENEAHLPKRKTGRESDVK HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH NSLDSPSPRVFETANIHFDACRYERAAAILSSIVSKKHNDDALLENSLRLLADCYFFLGK HCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC GKDGSFNLKAVDAYKHILRRYPDLRSRNDLVNFRLAECLEQAGNYEEAYAAYEDVIRKYP CCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC TSRYKQDVLYKMGEILYRTGRFTHAIEKLRNYLAGYPDGPYASRSSFLLGYCFQQTGRQT CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC DGALWYRNALNKWDNFEELPADVLYDLGLTLFSWQDYSRAASLFATYLNLYPEGGSKKSA CCHHHHHHHHHHCCCHHHCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC MFYLGRSFYTLNRFASALKVFSLLLENYPESGEAYESILFMANIGVMEPTMNFNVCMTGW EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECH DYYRNPVGTYDWMRRKFPGGRLEEWLLYQKGYALWKAGRCKEAFDLYCHLLDSYTHGDFK HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHCCCCCCC DKSRGYLFLNARRLIEEAYGRGDDLAVADIYYKIHNKISLSAETRDLFSRAGVSLRKLGF CCCCCEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHCCEEECHHHHHHHHHCCCHHHHHHC LSDASSVWNSLRQHGLNASGAAVLELMVVEDPGIRKGNDVPEEKWNALMKQFTENDGILK HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH ETAIKNLADYFYLKGRYDRAVSLYKILLEGKDNPDLLTIKGNYAHALKSNNDCASAIKIY HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHH QKIIHEYRDSPQNYEEELITEAYAGLVDCYFENTDYQRGIAASQQAVPRMKNQQKQMWTL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHH FRTGQSYRKMDDMTMMEKTFSELKEKGDETFWPKVVDYWVADQAWSENNITYMSSN HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEECC >Mature Secondary Structure MKLPFGFSNKNRRFLIVAILCSMGWVLWPHLTCHGETNRQDIHARRVSSYQNVDGAKQEV CCCCCCCCCCCCCEEHHHHHHHCCHHHHCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHH NLLKSRGYNAYLEKVLIPDKGVWYRVFIMKGPPASRSRVSVERKKKKPVKVRPSTNDPDS HHHHHCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEECCCCCCHHH RVKMIHRPARKQVPDFSDQGIRDSSLQRQTILQKNVIPDTDNENEAHLPKRKTGRESDVK HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH NSLDSPSPRVFETANIHFDACRYERAAAILSSIVSKKHNDDALLENSLRLLADCYFFLGK HCCCCCCCCEEEECCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC GKDGSFNLKAVDAYKHILRRYPDLRSRNDLVNFRLAECLEQAGNYEEAYAAYEDVIRKYP CCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC TSRYKQDVLYKMGEILYRTGRFTHAIEKLRNYLAGYPDGPYASRSSFLLGYCFQQTGRQT CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC DGALWYRNALNKWDNFEELPADVLYDLGLTLFSWQDYSRAASLFATYLNLYPEGGSKKSA CCHHHHHHHHHHCCCHHHCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC MFYLGRSFYTLNRFASALKVFSLLLENYPESGEAYESILFMANIGVMEPTMNFNVCMTGW EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECH DYYRNPVGTYDWMRRKFPGGRLEEWLLYQKGYALWKAGRCKEAFDLYCHLLDSYTHGDFK HHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHCCCCCCC DKSRGYLFLNARRLIEEAYGRGDDLAVADIYYKIHNKISLSAETRDLFSRAGVSLRKLGF CCCCCEEEEHHHHHHHHHHCCCCCEEHHHHHHHHHCCEEECHHHHHHHHHCCCHHHHHHC LSDASSVWNSLRQHGLNASGAAVLELMVVEDPGIRKGNDVPEEKWNALMKQFTENDGILK HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH ETAIKNLADYFYLKGRYDRAVSLYKILLEGKDNPDLLTIKGNYAHALKSNNDCASAIKIY HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHH QKIIHEYRDSPQNYEEELITEAYAGLVDCYFENTDYQRGIAASQQAVPRMKNQQKQMWTL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHH FRTGQSYRKMDDMTMMEKTFSELKEKGDETFWPKVVDYWVADQAWSENNITYMSSN HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA