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The map label for this gene is ybgF [H]

Identifier: 85858722

GI number: 85858722

Start: 901038

End: 901880

Strand: Direct

Name: ybgF [H]

Synonym: SYN_00190

Alternate gene names: 85858722

Gene position: 901038-901880 (Clockwise)

Preceding gene: 85858721

Following gene: 85858727

Centisome position: 28.34

GC content: 48.75

Gene sequence:

>843_bases
TTGAAAAGCTTTGGATTGCTTGCCGTGGCGGTCGGTCTGGTCATTTTTTCAGGCTGCGCCACCACGAAAGATTTGAACAG
AACGCAGACTGATCTGAATCAGAAAATTGAGATCGTCAGTGAAAAAGTGACGGCCGCCGATTCGAACATTGCCGTCTTGA
GGAAAGACGTTGACGCCGCCGTGGAAGGTCTGCGGAAAAGTCAGGCGAATATGGGCGCCGATCTCTCTGAACTTCGGGAA
CAGGTCCAGCAGGTGCGGGGCCAGGCGGAGTCTTTGCGAAAGGAAGTCGGGTCTCTGAACGGAAAGGCCGGCAAGAAGGA
TGACGAGAACAAGGAAATCAGAGAAAAACTGGATCAACTTTCCCAGAAGGTGAACTTTCTGGAAACCTTTCTTGCAATCG
GCGACAAAAATGGCCATGCGGCTGCCAGCAACGGAACCAAGGCTAAAGACAACGTGAAGGCAAAGACGACCAGCAGGGAA
GATCAGTATGCAGCCGCTTATTCTTTCTTCAAGGAAGGCAAATATGAGAAGGCAAGAACTGAATTCGAGAATTATCTGAA
GGCCAATCCCAAAACGAGCTATTCCGATAACGCCCAGTTCTGGATTGGTGAAACCTACTACTTTGAAAAAAAATATGAAA
AGGCCATTCTGGAATACGAAAAAGTAATCAAGAACTATCCTGATGGAAATCGGGCGGCGAATGCCCTTTTCAAACAGGGT
TTATGCTTTCTGATGCTGGAGGATAAGGCCAGCGCCAGGCTGATCTTTCAGCAGGTCATCAAGGATTATCCCAACACAAG
CCAGGCGAGAACGGCGCGGGCTAAACTCCTGGAAATCAAATAA

Upstream 100 bases:

>100_bases
AATGCCTCTCGATCCTGCGGAAACTGAAGAAGCCCGGGCCAAAAACAGAAGGGCTCATTTCGTAGTCACTCCGAAATAAT
AAGGTGCGGAGGGAGGTCCT

Downstream 100 bases:

>100_bases
TTCAAATGCCGGCGCTGCCTGTGCGGCCACAGCCGAAGCCGGGATAAAAAGTCCAATAAAAAAGACGCAGCAGACCTTGA
TCCGCTGCGTCTTTTTTATT

Product: tol system periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKSFGLLAVAVGLVIFSGCATTKDLNRTQTDLNQKIEIVSEKVTAADSNIAVLRKDVDAAVEGLRKSQANMGADLSELRE
QVQQVRGQAESLRKEVGSLNGKAGKKDDENKEIREKLDQLSQKVNFLETFLAIGDKNGHAAASNGTKAKDNVKAKTTSRE
DQYAAAYSFFKEGKYEKARTEFENYLKANPKTSYSDNAQFWIGETYYFEKKYEKAILEYEKVIKNYPDGNRAANALFKQG
LCFLMLEDKASARLIFQQVIKDYPNTSQARTARAKLLEIK

Sequences:

>Translated_280_residues
MKSFGLLAVAVGLVIFSGCATTKDLNRTQTDLNQKIEIVSEKVTAADSNIAVLRKDVDAAVEGLRKSQANMGADLSELRE
QVQQVRGQAESLRKEVGSLNGKAGKKDDENKEIREKLDQLSQKVNFLETFLAIGDKNGHAAASNGTKAKDNVKAKTTSRE
DQYAAAYSFFKEGKYEKARTEFENYLKANPKTSYSDNAQFWIGETYYFEKKYEKAILEYEKVIKNYPDGNRAANALFKQG
LCFLMLEDKASARLIFQQVIKDYPNTSQARTARAKLLEIK
>Mature_280_residues
MKSFGLLAVAVGLVIFSGCATTKDLNRTQTDLNQKIEIVSEKVTAADSNIAVLRKDVDAAVEGLRKSQANMGADLSELRE
QVQQVRGQAESLRKEVGSLNGKAGKKDDENKEIREKLDQLSQKVNFLETFLAIGDKNGHAAASNGTKAKDNVKAKTTSRE
DQYAAAYSFFKEGKYEKARTEFENYLKANPKTSYSDNAQFWIGETYYFEKKYEKAILEYEKVIKNYPDGNRAANALFKQG
LCFLMLEDKASARLIFQQVIKDYPNTSQARTARAKLLEIK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=194, Percent_Identity=28.3505154639175, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31355; Mature: 31355

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFGLLAVAVGLVIFSGCATTKDLNRTQTDLNQKIEIVSEKVTAADSNIAVLRKDVDAA
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VEGLRKSQANMGADLSELREQVQQVRGQAESLRKEVGSLNGKAGKKDDENKEIREKLDQL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
SQKVNFLETFLAIGDKNGHAAASNGTKAKDNVKAKTTSREDQYAAAYSFFKEGKYEKART
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
EFENYLKANPKTSYSDNAQFWIGETYYFEKKYEKAILEYEKVIKNYPDGNRAANALFKQG
HHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
LCFLMLEDKASARLIFQQVIKDYPNTSQARTARAKLLEIK
CEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure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CEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]