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The map label for this gene is yifB [H]

Identifier: 85858679

GI number: 85858679

Start: 856199

End: 857728

Strand: Direct

Name: yifB [H]

Synonym: SYN_03153

Alternate gene names: 85858679

Gene position: 856199-857728 (Clockwise)

Preceding gene: 85858673

Following gene: 85858680

Centisome position: 26.93

GC content: 57.25

Gene sequence:

>1530_bases
ATGATGGTCAAGGTGAGCAGTGCCACGCTGATAGGAATTGATTCCTATCCGGTGGTTGTTGAAGTGGATGTTGCCAGCGG
TCTGCCGCAGTTTTCTACGGTCGGTCTGCCCGACACGGCGGTAAGAGAGAGTAAGGATCGGATCCGGGCGGCCATTCGGA
ATTCGGGCTACAGCTTTCCGCGGAATCATGTGACCGTGAATCTTGCTCCCGCGGATATCCGGAAGGAAGGGACAGGATTC
GATCTGCCGATTGCGCTGGCCATTCTGACCGCGGAAGGCATCGTCCGGGGAGAAAGTGCGAAGGAATTCATGCTCATGGG
GGAACTGTCCCTGGATGGGGCCGTGAAAGGGGTAAACGGCGTTCTTTCCGCGGCTCAGCTTGCCAGGGATTTGAATTTCA
GGGGGCTGGTCGTTCCTGCGGAAAATGCGTCCGAAGCAGCCATGGTCAAAGGGATAGATGTCATCGCAATTGAAACGCTT
CCGGAAATTGTGGAGTATTTTAACGGGATCCGTGAGATCCATCCCGCGGGAACCGACAGCGACAGCATCTGGGAAAAGGC
GTCTCCAGCGGGTCGGGATTTCCTTGAAATCCGCGGTCAGGATCAGGCAAAGCGGGCGTTGGAGGTTGCCGCGGCCGGAG
GGCACAATCTCCTGATGATCGGTTCTCCTGGTTCGGGAAAAACCATGCTGGCGCAGCGACTTCCCTCCATTCTTCCTCCG
CTGACCTTTGAGGAAGCGGTGGAAATTACGAAAATTTATTCTGTCGCCGGACTGCTGGACAGGGAAGAGGTCCTTGTTGG
ATCGCGTCCCTTCCGGGCGCCTCATCACACCATTTCGGATGCCGGTATGGTCGGCGGTGGGCAAACTCCGAAGCCTGGAG
AGATCAGCCTCGCTCATTATGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCCGTAAAAATACGCTGGAGGCCCTGAGG
CAGCCTCTGGAAAACGGTGCGGTGACCATTACCCGGGCGTCGATTACCGCCTCTTTTCCCGCGCGATTCATGCTGGTCGC
GGCGATGAATCCCTGCCCCTGTGGCTATCATGGCGATCCCGCCCGTTCATGTCGCTGTACGCCCCGGCAGATCCGACAGT
ATCAGGCCCGCTTGTCCGGCCCACTACTGGACCGAATTGACATTCACATCCTTGTCCCATCGGTCGGATATCGGGAATTG
ACCGGGCCTTACAACGGAGAGTCTTCCGAGGTCATTGGCCGAAGGGTTTTACGGGCCAGGAAAAAACAGCAGGAACGGAT
GGCCGGTTCTGAGGCGTTGTGCAACGCCCGATTGCCGGATCGACAGATTTCTGAATTCTGCCCCCTGGATAACGATTCCC
ATCGGTTGATTGAAATGGCGATGGAGCGGCTGGGGCTCAGCGCCCGGGCGTTCACCCGGATAGTGAAGGTTGCCCGCACC
ATCGCGGATCTCGAAGATTGTGAAGCGATTTCGGCCTGCCATGTCGCGGAGGCGATTTCATACCGCAGTCTGGATTCCTA
TCGGGTATAA

Upstream 100 bases:

>100_bases
AAATTTCTGCAGGGGACCATTAAGGATCGAGTGCGGGTTCATGAGGCGTGTCATCCGTGTTTCATGAAAAACAAAGTGAA
TGATTCCAGGAGGATGAACT

Downstream 100 bases:

>100_bases
GTGATAAAAGAGCGATAAATACCGTTTGACAAAAGAGAGTAAAATTTTATTATGCAATTCGTTGTCTGGATGAAGCCTTG
AATTTTCCGGCTTTTGGAAA

Product: ATPase related to magnesium chelatase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MMVKVSSATLIGIDSYPVVVEVDVASGLPQFSTVGLPDTAVRESKDRIRAAIRNSGYSFPRNHVTVNLAPADIRKEGTGF
DLPIALAILTAEGIVRGESAKEFMLMGELSLDGAVKGVNGVLSAAQLARDLNFRGLVVPAENASEAAMVKGIDVIAIETL
PEIVEYFNGIREIHPAGTDSDSIWEKASPAGRDFLEIRGQDQAKRALEVAAAGGHNLLMIGSPGSGKTMLAQRLPSILPP
LTFEEAVEITKIYSVAGLLDREEVLVGSRPFRAPHHTISDAGMVGGGQTPKPGEISLAHYGVLFLDELPEFRKNTLEALR
QPLENGAVTITRASITASFPARFMLVAAMNPCPCGYHGDPARSCRCTPRQIRQYQARLSGPLLDRIDIHILVPSVGYREL
TGPYNGESSEVIGRRVLRARKKQQERMAGSEALCNARLPDRQISEFCPLDNDSHRLIEMAMERLGLSARAFTRIVKVART
IADLEDCEAISACHVAEAISYRSLDSYRV

Sequences:

>Translated_509_residues
MMVKVSSATLIGIDSYPVVVEVDVASGLPQFSTVGLPDTAVRESKDRIRAAIRNSGYSFPRNHVTVNLAPADIRKEGTGF
DLPIALAILTAEGIVRGESAKEFMLMGELSLDGAVKGVNGVLSAAQLARDLNFRGLVVPAENASEAAMVKGIDVIAIETL
PEIVEYFNGIREIHPAGTDSDSIWEKASPAGRDFLEIRGQDQAKRALEVAAAGGHNLLMIGSPGSGKTMLAQRLPSILPP
LTFEEAVEITKIYSVAGLLDREEVLVGSRPFRAPHHTISDAGMVGGGQTPKPGEISLAHYGVLFLDELPEFRKNTLEALR
QPLENGAVTITRASITASFPARFMLVAAMNPCPCGYHGDPARSCRCTPRQIRQYQARLSGPLLDRIDIHILVPSVGYREL
TGPYNGESSEVIGRRVLRARKKQQERMAGSEALCNARLPDRQISEFCPLDNDSHRLIEMAMERLGLSARAFTRIVKVART
IADLEDCEAISACHVAEAISYRSLDSYRV
>Mature_509_residues
MMVKVSSATLIGIDSYPVVVEVDVASGLPQFSTVGLPDTAVRESKDRIRAAIRNSGYSFPRNHVTVNLAPADIRKEGTGF
DLPIALAILTAEGIVRGESAKEFMLMGELSLDGAVKGVNGVLSAAQLARDLNFRGLVVPAENASEAAMVKGIDVIAIETL
PEIVEYFNGIREIHPAGTDSDSIWEKASPAGRDFLEIRGQDQAKRALEVAAAGGHNLLMIGSPGSGKTMLAQRLPSILPP
LTFEEAVEITKIYSVAGLLDREEVLVGSRPFRAPHHTISDAGMVGGGQTPKPGEISLAHYGVLFLDELPEFRKNTLEALR
QPLENGAVTITRASITASFPARFMLVAAMNPCPCGYHGDPARSCRCTPRQIRQYQARLSGPLLDRIDIHILVPSVGYREL
TGPYNGESSEVIGRRVLRARKKQQERMAGSEALCNARLPDRQISEFCPLDNDSHRLIEMAMERLGLSARAFTRIVKVART
IADLEDCEAISACHVAEAISYRSLDSYRV

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=507, Percent_Identity=44.3786982248521, Blast_Score=403, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 55148; Mature: 55148

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVKVSSATLIGIDSYPVVVEVDVASGLPQFSTVGLPDTAVRESKDRIRAAIRNSGYSFP
CEEEEECEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RNHVTVNLAPADIRKEGTGFDLPIALAILTAEGIVRGESAKEFMLMGELSLDGAVKGVNG
CCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
VLSAAQLARDLNFRGLVVPAENASEAAMVKGIDVIAIETLPEIVEYFNGIREIHPAGTDS
HHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC
DSIWEKASPAGRDFLEIRGQDQAKRALEVAAAGGHNLLMIGSPGSGKTMLAQRLPSILPP
HHHHHHCCCCCCCHHEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
LTFEEAVEITKIYSVAGLLDREEVLVGSRPFRAPHHTISDAGMVGGGQTPKPGEISLAHY
CCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH
GVLFLDELPEFRKNTLEALRQPLENGAVTITRASITASFPARFMLVAAMNPCPCGYHGDP
HHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHEEEEEECCCCCCCCCCCC
ARSCRCTPRQIRQYQARLSGPLLDRIDIHILVPSVGYRELTGPYNGESSEVIGRRVLRAR
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHH
KKQQERMAGSEALCNARLPDRQISEFCPLDNDSHRLIEMAMERLGLSARAFTRIVKVART
HHHHHHHCCCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IADLEDCEAISACHVAEAISYRSLDSYRV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMVKVSSATLIGIDSYPVVVEVDVASGLPQFSTVGLPDTAVRESKDRIRAAIRNSGYSFP
CEEEEECEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
RNHVTVNLAPADIRKEGTGFDLPIALAILTAEGIVRGESAKEFMLMGELSLDGAVKGVNG
CCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
VLSAAQLARDLNFRGLVVPAENASEAAMVKGIDVIAIETLPEIVEYFNGIREIHPAGTDS
HHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC
DSIWEKASPAGRDFLEIRGQDQAKRALEVAAAGGHNLLMIGSPGSGKTMLAQRLPSILPP
HHHHHHCCCCCCCHHEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
LTFEEAVEITKIYSVAGLLDREEVLVGSRPFRAPHHTISDAGMVGGGQTPKPGEISLAHY
CCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH
GVLFLDELPEFRKNTLEALRQPLENGAVTITRASITASFPARFMLVAAMNPCPCGYHGDP
HHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHEEEEEECCCCCCCCCCCC
ARSCRCTPRQIRQYQARLSGPLLDRIDIHILVPSVGYRELTGPYNGESSEVIGRRVLRAR
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHH
KKQQERMAGSEALCNARLPDRQISEFCPLDNDSHRLIEMAMERLGLSARAFTRIVKVART
HHHHHHHCCCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IADLEDCEAISACHVAEAISYRSLDSYRV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]