| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858660
Identifier: 85858660
GI number: 85858660
Start: 830377
End: 832287
Strand: Direct
Name: 85858660
Synonym: SYN_02907
Alternate gene names: NA
Gene position: 830377-832287 (Clockwise)
Preceding gene: 85858659
Following gene: 85858661
Centisome position: 26.12
GC content: 53.22
Gene sequence:
>1911_bases ATGCAGATCTCACGTCTCATAATAAAGAACTTCCGTGGTATTCAGAATGCGAGCATTATCCTATCAAAGCACTCTGTATT AATCGGCGACAATAACACAGGCAAAACCACAATACTTGAAGCCATTGACCTGGCGCTCGGGCCGGACCGTCTAAACCGAG TGCCCCCGGTTGACGTGCATGACTTCTATCAGGGCAAATACATCTCTGACGCATCTGCTGATGAGGTGCCTACGAGTACT AAAGCTGAACAAGGCGTTAAAGCTGAGGGTGCCGTTGATGCAGTAGCTAATAATGCAGATGTCCAGGTTGATGGTGATGT TACCGCTGAAGCACCGCAGATTGAGATCGAGGTTACCGTTGCAGACTTGACCGAAGAGCAGAAGGGTAGGTTCGGCGATT ACACCGAGTTCTGGGATACGGCGACCGACACCTTCTATGACCAGCCCAATCCCGCCGGCGTTGATGCTGTCTCGATCAGT GAAGCGCTACGGGTGAGTTTCATCGGCTGGTACGACCCGGAAGAAGATGACTTCAAGGGGAAGACCTACTTCACCCGCAG TCTCTCCGAAGGTGACAACCCTGTGGTGTTCTCCAAGAAGGACAAGCAGATTTGTGGTTTCCTATATCTTCGCTCCCTAC GTACGGGTTCACGCGCGCTTAGCTTGGAGCGAGGCAGCCTGCTCGACATCATTCTGCGCCTGAAAGAGGTCAGGCCACAG ATGTGGGAGTACACGATAAGCAAATTGGATTCGTACTCGGTTGCGAGTGACCCGGAATTGGGCATTTCCGGCGTGCTGGA AAGCATCAACGCGGCGCTCCAAAAATATGTACCGAAAGAATGGGGGATCGAACCCCATCTAAAGGTGTCGAACCTGACCC GCGAGCATTTGCGGAAGGTAATTACCGCTTTTATCGCCACAGGCGAGGGCCGCCACGCTGCGCCGTTCTATCGGCAGGGT ACTGGGACAATAAACATGCTCGTACTGGCGATGCTATCTCAAATCGCCGAAGACAAGCAAAACGTAATCTTCGCAATGGA AGAACCGGAAACGGCCATTCCACCCTATGCGCAAAAGCGGATTGTGCACGAAATCCGCACGCTCGCTTCGCAGACCATTT TCACCTCGCACTCGCCTTACGTGCTTGAGGAGTTCACATTGGAGGAGACTGTTGTCCTCGCTCGGGACGCGCAAGGCGCG CTTCGTCGGTCCGCGATCACCCTGCCTGATAGTGTGAAACTAAAGCGCTATCGACAGGAGTTTCGTACCCGTTTCTGTGA AGGTCTGCTGACCCGCCGCATCTTGGTCGCCGAAGGGGCGACGGAAGCTGCGTCATTTCCAGTTGTGTGTCGGCGTTTGG CGGAGTTGAAGCCTGCCACGTATTCCTCCTTGGAAGCGTTGGGTATCTGCACAATCGATGCCGGTGGGGAGACGAACATC TCCGATTTGGCCAAACTTTATCGTGACCTTGGCAAGCGGACTCTTGCCATCTGTGATAAGCAGACTGATGAGGAAAAGGC ACTGATTGAAGCACAGGTTGATACTCTATTCATGCACGACGAAAAGGGTTTCGAAGACCTCGTCCTCAAAAACACCACCG AAGACGCCTTGAAGCGCTTTACCAAATTGATCGTCTGGCCCCAACACCTTCAGCAGAAATACCCAGACCCTGAAGCCCAA GCGCAGGCTGCGTTGAGCGACTATTTCTGTGGAAAAAAGGCCGATTGGGGCGTATCTGATTTCCTCGCGCAGTGCACTGA GGACGAAATACCAGAATGGCTACGGGACACCTGCTTATCCTTGAAAGCAATTTGCGAACCTGTCCACGTTGGTGATGCCG ACGGCGGCGCGCTCAACGCACCCGAAGCTCCAGATTCTGAACAGGGAGTAGACGTGGATGCAACTAACTGA
Upstream 100 bases:
>100_bases CAGTGCGTGGCCAGCGGGTTATTTCTGCGTTTGCTTTGAGATCGACACCGCCTGTGTCTGATAGTGAAAATAGCTATAGA AAAACAAATAAGGAGTATGG
Downstream 100 bases:
>100_bases GAAACAGACAAAGATCATGGACGCCGAAGGGCACGTCCTCGTCACGGGAGGACCTGGCTCCGGTAAGACTACTATTTCTA TTCTCAAGGCAGCGCAAATC
Product: ATP-dependent endonuclease
Products: NA
Alternate protein names: ATP-Dependent OLD Family Endonuclease
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MQISRLIIKNFRGIQNASIILSKHSVLIGDNNTGKTTILEAIDLALGPDRLNRVPPVDVHDFYQGKYISDASADEVPTST KAEQGVKAEGAVDAVANNADVQVDGDVTAEAPQIEIEVTVADLTEEQKGRFGDYTEFWDTATDTFYDQPNPAGVDAVSIS EALRVSFIGWYDPEEDDFKGKTYFTRSLSEGDNPVVFSKKDKQICGFLYLRSLRTGSRALSLERGSLLDIILRLKEVRPQ MWEYTISKLDSYSVASDPELGISGVLESINAALQKYVPKEWGIEPHLKVSNLTREHLRKVITAFIATGEGRHAAPFYRQG TGTINMLVLAMLSQIAEDKQNVIFAMEEPETAIPPYAQKRIVHEIRTLASQTIFTSHSPYVLEEFTLEETVVLARDAQGA LRRSAITLPDSVKLKRYRQEFRTRFCEGLLTRRILVAEGATEAASFPVVCRRLAELKPATYSSLEALGICTIDAGGETNI SDLAKLYRDLGKRTLAICDKQTDEEKALIEAQVDTLFMHDEKGFEDLVLKNTTEDALKRFTKLIVWPQHLQQKYPDPEAQ AQAALSDYFCGKKADWGVSDFLAQCTEDEIPEWLRDTCLSLKAICEPVHVGDADGGALNAPEAPDSEQGVDVDATN
Sequences:
>Translated_636_residues MQISRLIIKNFRGIQNASIILSKHSVLIGDNNTGKTTILEAIDLALGPDRLNRVPPVDVHDFYQGKYISDASADEVPTST KAEQGVKAEGAVDAVANNADVQVDGDVTAEAPQIEIEVTVADLTEEQKGRFGDYTEFWDTATDTFYDQPNPAGVDAVSIS EALRVSFIGWYDPEEDDFKGKTYFTRSLSEGDNPVVFSKKDKQICGFLYLRSLRTGSRALSLERGSLLDIILRLKEVRPQ MWEYTISKLDSYSVASDPELGISGVLESINAALQKYVPKEWGIEPHLKVSNLTREHLRKVITAFIATGEGRHAAPFYRQG TGTINMLVLAMLSQIAEDKQNVIFAMEEPETAIPPYAQKRIVHEIRTLASQTIFTSHSPYVLEEFTLEETVVLARDAQGA LRRSAITLPDSVKLKRYRQEFRTRFCEGLLTRRILVAEGATEAASFPVVCRRLAELKPATYSSLEALGICTIDAGGETNI SDLAKLYRDLGKRTLAICDKQTDEEKALIEAQVDTLFMHDEKGFEDLVLKNTTEDALKRFTKLIVWPQHLQQKYPDPEAQ AQAALSDYFCGKKADWGVSDFLAQCTEDEIPEWLRDTCLSLKAICEPVHVGDADGGALNAPEAPDSEQGVDVDATN >Mature_636_residues MQISRLIIKNFRGIQNASIILSKHSVLIGDNNTGKTTILEAIDLALGPDRLNRVPPVDVHDFYQGKYISDASADEVPTST KAEQGVKAEGAVDAVANNADVQVDGDVTAEAPQIEIEVTVADLTEEQKGRFGDYTEFWDTATDTFYDQPNPAGVDAVSIS EALRVSFIGWYDPEEDDFKGKTYFTRSLSEGDNPVVFSKKDKQICGFLYLRSLRTGSRALSLERGSLLDIILRLKEVRPQ MWEYTISKLDSYSVASDPELGISGVLESINAALQKYVPKEWGIEPHLKVSNLTREHLRKVITAFIATGEGRHAAPFYRQG TGTINMLVLAMLSQIAEDKQNVIFAMEEPETAIPPYAQKRIVHEIRTLASQTIFTSHSPYVLEEFTLEETVVLARDAQGA LRRSAITLPDSVKLKRYRQEFRTRFCEGLLTRRILVAEGATEAASFPVVCRRLAELKPATYSSLEALGICTIDAGGETNI SDLAKLYRDLGKRTLAICDKQTDEEKALIEAQVDTLFMHDEKGFEDLVLKNTTEDALKRFTKLIVWPQHLQQKYPDPEAQ AQAALSDYFCGKKADWGVSDFLAQCTEDEIPEWLRDTCLSLKAICEPVHVGDADGGALNAPEAPDSEQGVDVDATN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70524; Mature: 70524
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQISRLIIKNFRGIQNASIILSKHSVLIGDNNTGKTTILEAIDLALGPDRLNRVPPVDVH CCHHHHHHHHHCCCCCCEEEEEECEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCCCCHH DFYQGKYISDASADEVPTSTKAEQGVKAEGAVDAVANNADVQVDGDVTAEAPQIEIEVTV HHHCCCEECCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCEEEEEEEE ADLTEEQKGRFGDYTEFWDTATDTFYDQPNPAGVDAVSISEALRVSFIGWYDPEEDDFKG ECCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCC KTYFTRSLSEGDNPVVFSKKDKQICGFLYLRSLRTGSRALSLERGSLLDIILRLKEVRPQ CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCHH MWEYTISKLDSYSVASDPELGISGVLESINAALQKYVPKEWGIEPHLKVSNLTREHLRKV HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHH ITAFIATGEGRHAAPFYRQGTGTINMLVLAMLSQIAEDKQNVIFAMEEPETAIPPYAQKR HHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH IVHEIRTLASQTIFTSHSPYVLEEFTLEETVVLARDAQGALRRSAITLPDSVKLKRYRQE HHHHHHHHHHHHHCCCCCCCEEHHHCHHHHEEEECCCHHHHHHHCCCCCCHHHHHHHHHH FRTRFCEGLLTRRILVAEGATEAASFPVVCRRLAELKPATYSSLEALGICTIDAGGETNI HHHHHHHHHHHHHHHEECCCCHHCCHHHHHHHHHHCCCCCHHCHHEEEEEEECCCCCCCH SDLAKLYRDLGKRTLAICDKQTDEEKALIEAQVDTLFMHDEKGFEDLVLKNTTEDALKRF HHHHHHHHHHCHHEEEHHCCCCCHHHHHHHHHHHEEEEECCCCCHHHHCCCCHHHHHHHH TKLIVWPQHLQQKYPDPEAQAQAALSDYFCGKKADWGVSDFLAQCTEDEIPEWLRDTCLS HHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHH LKAICEPVHVGDADGGALNAPEAPDSEQGVDVDATN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQISRLIIKNFRGIQNASIILSKHSVLIGDNNTGKTTILEAIDLALGPDRLNRVPPVDVH CCHHHHHHHHHCCCCCCEEEEEECEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCCCCHH DFYQGKYISDASADEVPTSTKAEQGVKAEGAVDAVANNADVQVDGDVTAEAPQIEIEVTV HHHCCCEECCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCEEEEEEEE ADLTEEQKGRFGDYTEFWDTATDTFYDQPNPAGVDAVSISEALRVSFIGWYDPEEDDFKG ECCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCC KTYFTRSLSEGDNPVVFSKKDKQICGFLYLRSLRTGSRALSLERGSLLDIILRLKEVRPQ CEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCHH MWEYTISKLDSYSVASDPELGISGVLESINAALQKYVPKEWGIEPHLKVSNLTREHLRKV HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHH ITAFIATGEGRHAAPFYRQGTGTINMLVLAMLSQIAEDKQNVIFAMEEPETAIPPYAQKR HHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH IVHEIRTLASQTIFTSHSPYVLEEFTLEETVVLARDAQGALRRSAITLPDSVKLKRYRQE HHHHHHHHHHHHHCCCCCCCEEHHHCHHHHEEEECCCHHHHHHHCCCCCCHHHHHHHHHH FRTRFCEGLLTRRILVAEGATEAASFPVVCRRLAELKPATYSSLEALGICTIDAGGETNI HHHHHHHHHHHHHHHEECCCCHHCCHHHHHHHHHHCCCCCHHCHHEEEEEEECCCCCCCH SDLAKLYRDLGKRTLAICDKQTDEEKALIEAQVDTLFMHDEKGFEDLVLKNTTEDALKRF HHHHHHHHHHCHHEEEHHCCCCCHHHHHHHHHHHEEEEECCCCCHHHHCCCCHHHHHHHH TKLIVWPQHLQQKYPDPEAQAQAALSDYFCGKKADWGVSDFLAQCTEDEIPEWLRDTCLS HHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHH LKAICEPVHVGDADGGALNAPEAPDSEQGVDVDATN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA