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The map label for this gene is atpF [H]

Identifier: 85858472

GI number: 85858472

Start: 628992

End: 629483

Strand: Direct

Name: atpF [H]

Synonym: SYN_00549

Alternate gene names: 85858472

Gene position: 628992-629483 (Clockwise)

Preceding gene: 85858471

Following gene: 85858473

Centisome position: 19.78

GC content: 47.97

Gene sequence:

>492_bases
GTGCCTGTTAAGGCAGTAAAGCTGAAGAGAGTTGAATTATCAAACGGAGAGGGATGGGTCATGACAATCGGTCTTGATTA
TACTTTTTGGATACAGGTCGTTAATTTCCTTTTCTTGATTTTTGTTCTGAATGTGCTCCTTTACAAACCCGTTATGGGAA
TGCTTCAGAAGCGGAAGGCGCAGATTGAAGCATCGGAGCAGGAAATCAAAGAGCTGAACCTGACCATAGCGCAGAAGGAA
GCTCGGTATGAGGAGGAGCTGAGGCTTGCCAAAAGCAGTGCTCTTGAGCAGAAGAAGGAAATCGTTCAGGAAGGTGCGGA
TGCTGCAAAGGCCATTCTTGATACGGCACGTCAGGAAGCGCCTCGGATGGTAGAACAGTTTCAGGAGAAAGTCGCCAAAG
ACGTCGCTGAAGCGAAGCGCGTGCTGCATGAGCAGTCGGAAAAGTTGGCAATGGAGATTGCTGAAAAAGTGATGGGAAGG
AGTATCCGATGA

Upstream 100 bases:

>100_bases
TTGTGGACAGTGCTGATGAGATTTGCAAGGGGACGGTTGAGCTTATAAGTCACAGCCGGGTGGGTATGGTTTAATATCCA
TCCGGCTGTTTTGTTTTTAA

Downstream 100 bases:

>100_bases
AAAAGTCTGTGTGGCATCACTCCCTGAAAGGATATTGTGGACGCATTGCGGCTGTCCTCTGTTTCTCGGTTCTGGTGCCG
TTGGTCGCGATGGCGGCCGA

Product: ATP synthase subunit B, sodium ion specific

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b [H]

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MPVKAVKLKRVELSNGEGWVMTIGLDYTFWIQVVNFLFLIFVLNVLLYKPVMGMLQKRKAQIEASEQEIKELNLTIAQKE
ARYEEELRLAKSSALEQKKEIVQEGADAAKAILDTARQEAPRMVEQFQEKVAKDVAEAKRVLHEQSEKLAMEIAEKVMGR
SIR

Sequences:

>Translated_163_residues
MPVKAVKLKRVELSNGEGWVMTIGLDYTFWIQVVNFLFLIFVLNVLLYKPVMGMLQKRKAQIEASEQEIKELNLTIAQKE
ARYEEELRLAKSSALEQKKEIVQEGADAAKAILDTARQEAPRMVEQFQEKVAKDVAEAKRVLHEQSEKLAMEIAEKVMGR
SIR
>Mature_162_residues
PVKAVKLKRVELSNGEGWVMTIGLDYTFWIQVVNFLFLIFVLNVLLYKPVMGMLQKRKAQIEASEQEIKELNLTIAQKEA
RYEEELRLAKSSALEQKKEIVQEGADAAKAILDTARQEAPRMVEQFQEKVAKDVAEAKRVLHEQSEKLAMEIAEKVMGRS
IR

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) [H]

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002146
- InterPro:   IPR005864 [H]

Pfam domain/function: PF00430 ATP-synt_B [H]

EC number: 3.6.3.14

Molecular weight: Translated: 18676; Mature: 18545

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKAVKLKRVELSNGEGWVMTIGLDYTFWIQVVNFLFLIFVLNVLLYKPVMGMLQKRKA
CCCCHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIEASEQEIKELNLTIAQKEARYEEELRLAKSSALEQKKEIVQEGADAAKAILDTARQEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
PRMVEQFQEKVAKDVAEAKRVLHEQSEKLAMEIAEKVMGRSIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PVKAVKLKRVELSNGEGWVMTIGLDYTFWIQVVNFLFLIFVLNVLLYKPVMGMLQKRKA
CCCHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIEASEQEIKELNLTIAQKEARYEEELRLAKSSALEQKKEIVQEGADAAKAILDTARQEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
PRMVEQFQEKVAKDVAEAKRVLHEQSEKLAMEIAEKVMGRSIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA