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The map label for this gene is yrbD [C]

Identifier: 85858105

GI number: 85858105

Start: 277057

End: 277575

Strand: Direct

Name: yrbD [C]

Synonym: SYN_01264

Alternate gene names: 85858105

Gene position: 277057-277575 (Clockwise)

Preceding gene: 85858104

Following gene: 85858106

Centisome position: 8.71

GC content: 52.02

Gene sequence:

>519_bases
TTGGCCGACTACAGTGCGCCACGCAGGAGTGAATTCATGAAAAAGTACGCCATGGAAACAACGGTAGGCATCTTTCTCGC
TGTCGGAATTATCCTGATCGGGTACATGACCGTGAAACTCGGTCATGTCTCCCTTTTCGGCGATGACACCTATAAATTGT
CTGCCCGCTTTACCTCGGTGTCCGGTCTGCGGTCAGGCAGTCCTGTGAATATGCTGGGCATCGAAATCGGCAGGGTGGAA
AAGCTTGCCATAGACCAGCAGGATCTGCGGGCTGTCGTGGAAATGAGTATCAGGAAGGACATCAAGATCTATGACGACGC
TATTGCCTCCATCAAAACGGAAGGACTCATCGGTGACAAATATCTCAGCATCGATCCGGGGGGCGGCGGAGATCCTCTTC
AGCCGGGCGGGACAATTACGGAAACGCAGCCGGCGCTGGATATCGAGAACCTCGTCAGCAAGTACGCCTTCGGAGAGGTA
AAAAAAGCGGACAGTACGGATAATACAGACAAAAAATAA

Upstream 100 bases:

>100_bases
GAATGCATCGAATTTGTCGTTCATGCCGGACTGGCCCAGGGGAACCCTCTGGAAGAAATAGATTCCGTCATCGAGTCCGC
AAAGCGTCAACAAAAAGAAA

Downstream 100 bases:

>100_bases
AAAGGATGAATTATGAAGAGACTGTTCATGAACGTTATTTTCCTGTTGCTTCTGCTGTTGCCTTCATCTGTATTTGCCGG
TGTGCCTCTGGATACGGTTC

Product: organic solvents resistance ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MADYSAPRRSEFMKKYAMETTVGIFLAVGIILIGYMTVKLGHVSLFGDDTYKLSARFTSVSGLRSGSPVNMLGIEIGRVE
KLAIDQQDLRAVVEMSIRKDIKIYDDAIASIKTEGLIGDKYLSIDPGGGGDPLQPGGTITETQPALDIENLVSKYAFGEV
KKADSTDNTDKK

Sequences:

>Translated_172_residues
MADYSAPRRSEFMKKYAMETTVGIFLAVGIILIGYMTVKLGHVSLFGDDTYKLSARFTSVSGLRSGSPVNMLGIEIGRVE
KLAIDQQDLRAVVEMSIRKDIKIYDDAIASIKTEGLIGDKYLSIDPGGGGDPLQPGGTITETQPALDIENLVSKYAFGEV
KKADSTDNTDKK
>Mature_171_residues
ADYSAPRRSEFMKKYAMETTVGIFLAVGIILIGYMTVKLGHVSLFGDDTYKLSARFTSVSGLRSGSPVNMLGIEIGRVEK
LAIDQQDLRAVVEMSIRKDIKIYDDAIASIKTEGLIGDKYLSIDPGGGGDPLQPGGTITETQPALDIENLVSKYAFGEVK
KADSTDNTDKK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=165, Percent_Identity=32.1212121212121, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 18644; Mature: 18512

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYSAPRRSEFMKKYAMETTVGIFLAVGIILIGYMTVKLGHVSLFGDDTYKLSARFTSV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEEEHH
SGLRSGSPVNMLGIEIGRVEKLAIDQQDLRAVVEMSIRKDIKIYDDAIASIKTEGLIGDK
CCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
YLSIDPGGGGDPLQPGGTITETQPALDIENLVSKYAFGEVKKADSTDNTDKK
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADYSAPRRSEFMKKYAMETTVGIFLAVGIILIGYMTVKLGHVSLFGDDTYKLSARFTSV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEEEHH
SGLRSGSPVNMLGIEIGRVEKLAIDQQDLRAVVEMSIRKDIKIYDDAIASIKTEGLIGDK
CCCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
YLSIDPGGGGDPLQPGGTITETQPALDIENLVSKYAFGEVKKADSTDNTDKK
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]