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The map label for this gene is cspI [C]

Identifier: 85857886

GI number: 85857886

Start: 44429

End: 44959

Strand: Direct

Name: cspI [C]

Synonym: SYN_00019

Alternate gene names: 85857886

Gene position: 44429-44959 (Clockwise)

Preceding gene: 85857872

Following gene: 85857902

Centisome position: 1.4

GC content: 54.24

Gene sequence:

>531_bases
ATGATCATTCCACTCCAGATCACAGCCCAGGGCGTAGAACTCAGTGACGAGATAAGGGACGAAATCACTGAAAGGGCTAA
CAAGCTCGATAAGTTCTACGACCGGATAATGCGCTGCAGAGTTGTCGTGGAGGAGCCGAAACGGCATCCCAATGAGGGGA
AGTTATACAGCGTGCACATCATCATGACCGTTCCCGGGGGGGAGATCGTGACCAAGAGGGAGCGGAATGAGGATCTCTGG
GTGGCGATGCGGGATTCCTTCCAGGCCGCCCAGCGGAAACTCGAGGATTTCTCCCGAGAGCAGCGGGGCGATGTGAAGAC
TCACGAAAAGCAGCCGCGGGGGCGCATCAGCGTGATTTTCCCGGATCAGGGATATGGATTTCTCGTCCATCCCGAAGGAT
ACGATGTCTATTTTCACGCCAACAGTGTATTAAACAGGGATTTCGATAAACTTGCCGTGGGGATGGAAGTCCGGTTTAAC
GAAGAGATGGGCGACAAGGGACCGCAGGCAAGTTCCGTGATCGTCTTGTAG

Upstream 100 bases:

>100_bases
GCGTTTCTTTCACGTTCCAATGTGCTAAAATGTATACAAATATCGCAACTGGTTTCCTTGAAGAAATTAATGTTCTCAAC
AAAGATTAAGGAGGCAGACG

Downstream 100 bases:

>100_bases
GTGATTTTGAGGAAGCTTTCCCGGCCATGAAAACATCCGGCCTGCCATTGCCCTGCTGATCGCCTCCAGGGGGGACGGTG
TATCGCCTTCCCCCCCCTGG

Product: cold shock DNA -binding domain-containing protein

Products: NA

Alternate protein names: SSU Ribosomal Modulation Protein; Cold-Shock Protein; Cold-Shock Domain-Containing Protein; Sigma-54 Modulation Protein; Cold Shock Protein; Cold Shock Domain-Contain Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MIIPLQITAQGVELSDEIRDEITERANKLDKFYDRIMRCRVVVEEPKRHPNEGKLYSVHIIMTVPGGEIVTKRERNEDLW
VAMRDSFQAAQRKLEDFSREQRGDVKTHEKQPRGRISVIFPDQGYGFLVHPEGYDVYFHANSVLNRDFDKLAVGMEVRFN
EEMGDKGPQASSVIVL

Sequences:

>Translated_176_residues
MIIPLQITAQGVELSDEIRDEITERANKLDKFYDRIMRCRVVVEEPKRHPNEGKLYSVHIIMTVPGGEIVTKRERNEDLW
VAMRDSFQAAQRKLEDFSREQRGDVKTHEKQPRGRISVIFPDQGYGFLVHPEGYDVYFHANSVLNRDFDKLAVGMEVRFN
EEMGDKGPQASSVIVL
>Mature_176_residues
MIIPLQITAQGVELSDEIRDEITERANKLDKFYDRIMRCRVVVEEPKRHPNEGKLYSVHIIMTVPGGEIVTKRERNEDLW
VAMRDSFQAAQRKLEDFSREQRGDVKTHEKQPRGRISVIFPDQGYGFLVHPEGYDVYFHANSVLNRDFDKLAVGMEVRFN
EEMGDKGPQASSVIVL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20362; Mature: 20362

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPLQITAQGVELSDEIRDEITERANKLDKFYDRIMRCRVVVEEPKRHPNEGKLYSVHI
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE
IMTVPGGEIVTKRERNEDLWVAMRDSFQAAQRKLEDFSREQRGDVKTHEKQPRGRISVIF
EEECCCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
PDQGYGFLVHPEGYDVYFHANSVLNRDFDKLAVGMEVRFNEEMGDKGPQASSVIVL
CCCCCEEEECCCCEEEEEECCCHHCCCHHHHEEEEEEEECHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MIIPLQITAQGVELSDEIRDEITERANKLDKFYDRIMRCRVVVEEPKRHPNEGKLYSVHI
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE
IMTVPGGEIVTKRERNEDLWVAMRDSFQAAQRKLEDFSREQRGDVKTHEKQPRGRISVIF
EEECCCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
PDQGYGFLVHPEGYDVYFHANSVLNRDFDKLAVGMEVRFNEEMGDKGPQASSVIVL
CCCCCEEEECCCCEEEEEECCCHHCCCHHHHEEEEEEEECHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA