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The map label for this gene is traF [H]

Identifier: 85375784

GI number: 85375784

Start: 2985117

End: 2985932

Strand: Reverse

Name: traF [H]

Synonym: ELI_14785

Alternate gene names: 85375784

Gene position: 2985932-2985117 (Counterclockwise)

Preceding gene: 85375785

Following gene: 85375783

Centisome position: 97.82

GC content: 64.09

Gene sequence:

>816_bases
ATGATGCGCCGCCAATTGATCGTCGCCCTGACCTTGTGGCTCGCCACTGTAATACCCGCCCCGGCAACCGCGCAGCAAAG
CCGGACGGCAGAGGCGACCACGAGAGCTGACAGCCTCTATTGCGAGCAGCGCCGGCTCGGTTACTGGTTCTATTGCGTCA
AGCCGGTCCCGGTAGCCGAACCCGAAAAGGAGCAGCCTGCAAAAGAGGTTGCAGCTACGCAGCAGCTCGACGCGATCACC
GAAGAATTGCGCGAGCTCAAAGCCCGCGCGATCCTCTATCCGACACCGGAGAACGTCACCGCCTACATCCGTTTTCAGCG
CGCACAGCTCGACCGGGCTTCGCTGTTCTCCGATGTCTGGCAGCGCGCCATCTGGCAGGATCCCGAACTCGACTACACGC
TTGAGCGCCCGGTCGGCGCGCTTGCCAAGAAGCAATGGCAGGATGCGCGCGCTGCCGACCGCGACGCGGTGATGGCGCGG
CTGTCTGAGCGCTACGGCCTGTTCTATTTCTTTGCCCAGACCTGCGGGGCCTGCGAGGTCATGAGCCCGATCGTCAGATC
AGTGGCGGACCGTTGGCAGATTACGGTGCGGGCGATCTCGACCGACGGCGGACCCTCGCGGCACTTCCCTGACTACAAGG
TCGAAAGCGGCCAGCGCCCGCGCATGGGGCTCGAGCCCGGGATTACGCCTGCGCTGGTGCTTTGGGACAGCCTCGCCAAG
CGCCCGATCCCGATCGGATACGGCGTGCTCTCGGCCGACGAGCTCCAGGACCGCATCTACCTCCTCACCGTGAAAGAAGC
CGGACATGATTACTAG

Upstream 100 bases:

>100_bases
TCTATGCGGAATTTACCGAGGCGGCGCGGCTTCCCGATGAGCTCGAGACCAGCGTCCTTATCCAGCAGAAGATCGAAGAC
TATTACGCACGGAGTGGCCA

Downstream 100 bases:

>100_bases
AATTCGCAATGCAGCGCTTACCATAGCCGCAGCCAGCATGGTCGTATCACCGGTTGCAGCTAATGTCGGAGACAGCATGG
ACCGCTTCATGGATGACATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MMRRQLIVALTLWLATVIPAPATAQQSRTAEATTRADSLYCEQRRLGYWFYCVKPVPVAEPEKEQPAKEVAATQQLDAIT
EELRELKARAILYPTPENVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLERPVGALAKKQWQDARAADRDAVMAR
LSERYGLFYFFAQTCGACEVMSPIVRSVADRWQITVRAISTDGGPSRHFPDYKVESGQRPRMGLEPGITPALVLWDSLAK
RPIPIGYGVLSADELQDRIYLLTVKEAGHDY

Sequences:

>Translated_271_residues
MMRRQLIVALTLWLATVIPAPATAQQSRTAEATTRADSLYCEQRRLGYWFYCVKPVPVAEPEKEQPAKEVAATQQLDAIT
EELRELKARAILYPTPENVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLERPVGALAKKQWQDARAADRDAVMAR
LSERYGLFYFFAQTCGACEVMSPIVRSVADRWQITVRAISTDGGPSRHFPDYKVESGQRPRMGLEPGITPALVLWDSLAK
RPIPIGYGVLSADELQDRIYLLTVKEAGHDY
>Mature_271_residues
MMRRQLIVALTLWLATVIPAPATAQQSRTAEATTRADSLYCEQRRLGYWFYCVKPVPVAEPEKEQPAKEVAATQQLDAIT
EELRELKARAILYPTPENVTAYIRFQRAQLDRASLFSDVWQRAIWQDPELDYTLERPVGALAKKQWQDARAADRDAVMAR
LSERYGLFYFFAQTCGACEVMSPIVRSVADRWQITVRAISTDGGPSRHFPDYKVESGQRPRMGLEPGITPALVLWDSLAK
RPIPIGYGVLSADELQDRIYLLTVKEAGHDY

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30765; Mature: 30765

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRQLIVALTLWLATVIPAPATAQQSRTAEATTRADSLYCEQRRLGYWFYCVKPVPVAE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
PEKEQPAKEVAATQQLDAITEELRELKARAILYPTPENVTAYIRFQRAQLDRASLFSDVW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEEEEEHHHHHHHHHHHHHHH
QRAIWQDPELDYTLERPVGALAKKQWQDARAADRDAVMARLSERYGLFYFFAQTCGACEV
HHHHCCCCCCCEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCHHHH
MSPIVRSVADRWQITVRAISTDGGPSRHFPDYKVESGQRPRMGLEPGITPALVLWDSLAK
HHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
RPIPIGYGVLSADELQDRIYLLTVKEAGHDY
CCCCCCCCCCCHHHHCCEEEEEEEECCCCCC
>Mature Secondary Structure
MMRRQLIVALTLWLATVIPAPATAQQSRTAEATTRADSLYCEQRRLGYWFYCVKPVPVAE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
PEKEQPAKEVAATQQLDAITEELRELKARAILYPTPENVTAYIRFQRAQLDRASLFSDVW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEEEEEHHHHHHHHHHHHHHH
QRAIWQDPELDYTLERPVGALAKKQWQDARAADRDAVMARLSERYGLFYFFAQTCGACEV
HHHHCCCCCCCEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCHHHH
MSPIVRSVADRWQITVRAISTDGGPSRHFPDYKVESGQRPRMGLEPGITPALVLWDSLAK
HHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
RPIPIGYGVLSADELQDRIYLLTVKEAGHDY
CCCCCCCCCCCHHHHCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]